miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 22385 0.69 0.938067
Target:  5'- cCCCGCCCCCGgcucggacccCGGCuCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGcGC- -5'
31128 5' -51.7 NC_006560.1 + 52107 0.69 0.938555
Target:  5'- cCCCGCCgCCCGcgGAUauaa-GGCGCu -3'
miRNA:   3'- -GGGCGG-GGGCaaUUAauaagUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 69672 0.69 0.938555
Target:  5'- gCCCGCcaCCCCGggg-----UCGGCGCu -3'
miRNA:   3'- -GGGCG--GGGGCaauuaauaAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 110635 0.69 0.938555
Target:  5'- cCCCGCuCCuCCGUUcGUUcucucUCGGCGCc -3'
miRNA:   3'- -GGGCG-GG-GGCAAuUAAua---AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 142171 0.69 0.938555
Target:  5'- cCCCGCCCCgCGcgggcccUAAUggga-GGCGCGg -3'
miRNA:   3'- -GGGCGGGG-GCa------AUUAauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 134245 0.69 0.942372
Target:  5'- gCCCGCCCCCGcggcccgcccgAAgccgggCAGgGCGg -3'
miRNA:   3'- -GGGCGGGGGCaa---------UUaauaa-GUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 142432 0.69 0.944677
Target:  5'- cCCCGCCgCCCGgcgcggcggCcGCGCGg -3'
miRNA:   3'- -GGGCGG-GGGCaauuaauaaGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 23961 0.69 0.950385
Target:  5'- gCCCGCCgCCCGcccgc----CGGCGCGc -3'
miRNA:   3'- -GGGCGG-GGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 104767 0.69 0.952059
Target:  5'- cCCCGCCCCgGgcGGg-----GGCGCGg -3'
miRNA:   3'- -GGGCGGGGgCaaUUaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 135459 0.69 0.955686
Target:  5'- gCCGCCCCCGgagcagccgcCGGUGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa-GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 50169 0.69 0.956466
Target:  5'- aCCGCCCCCGcgccgccgUCGG-GCGu -3'
miRNA:   3'- gGGCGGGGGCaauuaauaAGUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 79870 0.69 0.957618
Target:  5'- cCCCGCCCCCGccacgcc-UCGGCa-- -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGUCGcgc -5'
31128 5' -51.7 NC_006560.1 + 79448 0.68 0.959122
Target:  5'- cCCCGCUCCgCGgcgcgUGAgcccccggCGGCGCGu -3'
miRNA:   3'- -GGGCGGGG-GCa----AUUaauaa---GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 50255 0.68 0.959492
Target:  5'- gCCgCGCCUCCGggcggccgggcUCGGCGCGc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaaua---AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 124300 0.68 0.95986
Target:  5'- gCCGCCCCaCGUgcaggcgGAgacGUUCgAGCGCc -3'
miRNA:   3'- gGGCGGGG-GCAa------UUaa-UAAG-UCGCGc -5'
31128 5' -51.7 NC_006560.1 + 662 0.68 0.96095
Target:  5'- uUCGCaCCCCGgcgcgcccgCGGCGCGg -3'
miRNA:   3'- gGGCG-GGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 13652 0.68 0.96095
Target:  5'- cCCCGCCCgCCGagacgcacgCgAGCGCGa -3'
miRNA:   3'- -GGGCGGG-GGCaauuaauaaG-UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 48841 0.68 0.963412
Target:  5'- gCCGCUCCUGUUcGUgca-CGGCGCc -3'
miRNA:   3'- gGGCGGGGGCAAuUAauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 111569 0.68 0.963755
Target:  5'- aCCGCCCCCaucaag----CAGCGCc -3'
miRNA:   3'- gGGCGGGGGcaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 132033 0.68 0.964433
Target:  5'- -aCGCCCCCGgccgccgcgCuGCGCGg -3'
miRNA:   3'- ggGCGGGGGCaauuaauaaGuCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.