miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 96101 0.68 0.966739
Target:  5'- gCCGCCCCCGcgg------CGGCgGCGg -3'
miRNA:   3'- gGGCGGGGGCaauuaauaaGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 53510 0.68 0.968007
Target:  5'- cCCCGCCCCCGcgcccg---CcGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGuCGCGc -5'
31128 5' -51.7 NC_006560.1 + 38074 0.68 0.969846
Target:  5'- gCCgGgCCCCGggGGUgugUCGGUGCc -3'
miRNA:   3'- -GGgCgGGGGCaaUUAauaAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 61357 0.68 0.969846
Target:  5'- cCCCuCCCCCGUUcu---UUC-GCGCGc -3'
miRNA:   3'- -GGGcGGGGGCAAuuaauAAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 26167 0.68 0.969846
Target:  5'- cCCCGCCCCCGggGAgccugggGUccggaaUCugcccGUGCGa -3'
miRNA:   3'- -GGGCGGGGGCaaUUaa-----UA------AGu----CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 112478 0.68 0.971028
Target:  5'- cCCUGCCCCUGUguccgaccgcGUUCcgggacGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCAauuaa-----UAAGu-----CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 15508 0.68 0.971319
Target:  5'- cCCCGCCCCCGagucccggggcCAGC-CGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa--GUCGcGC- -5'
31128 5' -51.7 NC_006560.1 + 125026 0.68 0.971893
Target:  5'- gCCGCCCaCCGgcggcugg-UGGCGCGg -3'
miRNA:   3'- gGGCGGG-GGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 120087 0.68 0.97274
Target:  5'- gCCCGCggagguCCCCGggGAccccUCGGCGUGc -3'
miRNA:   3'- -GGGCG------GGGGCaaUUaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 80029 0.68 0.973839
Target:  5'- gCCCGCCUCCGagacac---CGGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 14119 0.67 0.974109
Target:  5'- cCCCGCgCCCauggcggccagggUCAGCGCGc -3'
miRNA:   3'- -GGGCGgGGGcaauuaaua----AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 13793 0.67 0.975427
Target:  5'- aUCGCCCUCGg----UGUUCGGgGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaAUAAGUCgCGc -5'
31128 5' -51.7 NC_006560.1 + 103134 0.67 0.976446
Target:  5'- gCgCGCCCCCGggcgccc-UCuGCGCGu -3'
miRNA:   3'- -GgGCGGGGGCaauuaauaAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 25738 0.67 0.977676
Target:  5'- cCCCGgCCCCGccacagaca-GGCGCGa -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 101928 0.67 0.977916
Target:  5'- gCCGCCCUCGUcgccgAU--GGCGCGc -3'
miRNA:   3'- gGGCGGGGGCAauuaaUAagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 118547 0.67 0.977916
Target:  5'- aCCGCCCCgGcUGGcUGUggagcCGGCGCu -3'
miRNA:   3'- gGGCGGGGgCaAUUaAUAa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 119796 0.67 0.977916
Target:  5'- gCCCGaCCCCCGgcGGgcgcUGUUCuGCGa- -3'
miRNA:   3'- -GGGC-GGGGGCaaUUa---AUAAGuCGCgc -5'
31128 5' -51.7 NC_006560.1 + 13417 0.67 0.977916
Target:  5'- aCCGCCUCCG--------UCGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 108379 0.67 0.978858
Target:  5'- gCCUGCuCCCCGaacacg---CGGCGCGc -3'
miRNA:   3'- -GGGCG-GGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 43501 0.67 0.979089
Target:  5'- gUCGCCCCCGcgccccccagccgCAGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.