Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31128 | 5' | -51.7 | NC_006560.1 | + | 92360 | 0.66 | 0.986043 |
Target: 5'- gCCGCCgCCUGgucucugcgcggCGGCGCGg -3' miRNA: 3'- gGGCGG-GGGCaauuaauaa---GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 57969 | 0.66 | 0.986043 |
Target: 5'- gCCUuauaGCCCCCGc-------UCGGCGCGg -3' miRNA: 3'- -GGG----CGGGGGCaauuaauaAGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 147460 | 0.66 | 0.986043 |
Target: 5'- uCCCGCCacccaCCGgcgUGGUUGUcgucgUCGGUGUc -3' miRNA: 3'- -GGGCGGg----GGCa--AUUAAUA-----AGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 81933 | 0.66 | 0.986211 |
Target: 5'- aCCCGUUcugCCCGUUAAacuggaaggcgCAGCGCa -3' miRNA: 3'- -GGGCGG---GGGCAAUUaauaa------GUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 39361 | 0.66 | 0.986211 |
Target: 5'- cCCCGgCCCCGgcggccc--CGGCGCc -3' miRNA: 3'- -GGGCgGGGGCaauuaauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 52678 | 0.66 | 0.986708 |
Target: 5'- cCCCGCCCUgGUccccaagcUCcuGGCGCGg -3' miRNA: 3'- -GGGCGGGGgCAauuaaua-AG--UCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 39191 | 0.66 | 0.986708 |
Target: 5'- cCCCGCgCCCCGgucccucucGUUCcgcgGGCGUGu -3' miRNA: 3'- -GGGCG-GGGGCaauuaa---UAAG----UCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 22214 | 0.66 | 0.986708 |
Target: 5'- gCCCGCCCCCGcggccc---CGGCcCGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaaGUCGcGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 16001 | 0.66 | 0.98719 |
Target: 5'- cCCCgacaGCCCCCGUaccaccgg-AGCGCGa -3' miRNA: 3'- -GGG----CGGGGGCAauuaauaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 112225 | 0.66 | 0.987505 |
Target: 5'- gCCCGCCUUCGggAGgaGUUCcuggagacguggcAGCGCc -3' miRNA: 3'- -GGGCGGGGGCaaUUaaUAAG-------------UCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 78317 | 0.66 | 0.987659 |
Target: 5'- aCCgGCCCUCGggc------CAGCGCGu -3' miRNA: 3'- -GGgCGGGGGCaauuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 1 | 0.66 | 0.987659 |
Target: 5'- cCCCGCgccgcguuUCCCGgcGGggcgGUUCGGCgGCGg -3' miRNA: 3'- -GGGCG--------GGGGCaaUUaa--UAAGUCG-CGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 101220 | 0.66 | 0.987659 |
Target: 5'- cCUCGCCgaCCGggGucgUGUUC-GCGCGg -3' miRNA: 3'- -GGGCGGg-GGCaaUua-AUAAGuCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 150330 | 0.66 | 0.987659 |
Target: 5'- cCCCGCgccgcguuUCCCGgcGGggcgGUUCGGCgGCGg -3' miRNA: 3'- -GGGCG--------GGGGCaaUUaa--UAAGUCG-CGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 41478 | 0.66 | 0.987813 |
Target: 5'- aCCCGCCCCagcagc----UCgAGCGCGa -3' miRNA: 3'- -GGGCGGGGgcaauuaauaAG-UCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 147676 | 0.66 | 0.988264 |
Target: 5'- aCCGCCUCCucggcc---UCGGCGCGc -3' miRNA: 3'- gGGCGGGGGcaauuaauaAGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 66615 | 0.66 | 0.988702 |
Target: 5'- cCCCGCgCgCGUgcagccgcucUCGGCGCGa -3' miRNA: 3'- -GGGCGgGgGCAauuaaua---AGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 15329 | 0.66 | 0.988845 |
Target: 5'- gCCGgUCCCGUUcgcggc-CGGCGCGg -3' miRNA: 3'- gGGCgGGGGCAAuuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 79716 | 0.66 | 0.988987 |
Target: 5'- gCCGCCCCCGU-------UCAG-GCc -3' miRNA: 3'- gGGCGGGGGCAauuaauaAGUCgCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 29126 | 0.66 | 0.989127 |
Target: 5'- aCCGCCCCUuggGggAGUgggcuccCGGCGCa -3' miRNA: 3'- gGGCGGGGG---CaaUUAauaa---GUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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