Results 41 - 60 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31128 | 5' | -51.7 | NC_006560.1 | + | 106184 | 0.66 | 0.986043 |
Target: 5'- cCCCGCCCCCcgcucuucuggCGGCugGCGg -3' miRNA: 3'- -GGGCGGGGGcaauuaauaa-GUCG--CGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 23429 | 0.66 | 0.985873 |
Target: 5'- gCCGCCCUCGccgccgaccgCGGCGCc -3' miRNA: 3'- gGGCGGGGGCaauuaauaa-GUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 30897 | 0.67 | 0.984998 |
Target: 5'- cCCCGCCCCgGgccca-----GGCGCa -3' miRNA: 3'- -GGGCGGGGgCaauuaauaagUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 52308 | 0.67 | 0.984269 |
Target: 5'- gCCUGCUCCCcacgccgGAggGgcucgUCGGCGCGg -3' miRNA: 3'- -GGGCGGGGGcaa----UUaaUa----AGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 100725 | 0.67 | 0.984269 |
Target: 5'- gCCGCUCCCGUa-------CAGCGCc -3' miRNA: 3'- gGGCGGGGGCAauuaauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 147619 | 0.67 | 0.984269 |
Target: 5'- gCCGCcuCCCCGggGAgg---CGGUGCGu -3' miRNA: 3'- gGGCG--GGGGCaaUUaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 82218 | 0.67 | 0.984269 |
Target: 5'- cCCCGCUUCUGcgcGAgcaGUUCGGCGUGc -3' miRNA: 3'- -GGGCGGGGGCaa-UUaa-UAAGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 18084 | 0.67 | 0.984083 |
Target: 5'- cCCCGCCCCuCGagagagcgggCGGuCGCGg -3' miRNA: 3'- -GGGCGGGG-GCaauuaauaa-GUC-GCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 65930 | 0.67 | 0.983705 |
Target: 5'- gCCGCCCCCGcaGGUccggccgccagcggUAcaggcgggCGGCGCGg -3' miRNA: 3'- gGGCGGGGGCaaUUA--------------AUaa------GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 42122 | 0.67 | 0.983513 |
Target: 5'- -aCGCCCCCGgacgc----CAGCGCc -3' miRNA: 3'- ggGCGGGGGCaauuaauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 47051 | 0.67 | 0.981713 |
Target: 5'- aCCGCCCCCGagagaccg-C-GCGCGc -3' miRNA: 3'- gGGCGGGGGCaauuaauaaGuCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 21709 | 0.67 | 0.981504 |
Target: 5'- gCCGCCCCCGcgccc----CGGgGCGg -3' miRNA: 3'- gGGCGGGGGCaauuaauaaGUCgCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 94421 | 0.67 | 0.980214 |
Target: 5'- aCCUGCCCCaCGccgccgGGUUcucggaggCGGCGCGg -3' miRNA: 3'- -GGGCGGGG-GCaa----UUAAuaa-----GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 18882 | 0.67 | 0.980214 |
Target: 5'- cCCCGCCCgCCGUggg-----CGGCGg- -3' miRNA: 3'- -GGGCGGG-GGCAauuaauaaGUCGCgc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 114887 | 0.67 | 0.980214 |
Target: 5'- gCCGCUCCCGcauaaaaggcccggCGGCGCGc -3' miRNA: 3'- gGGCGGGGGCaauuaauaa-----GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 129580 | 0.67 | 0.980214 |
Target: 5'- gCCUGCUCUCGgagGAggcgGUgCGGCGCGu -3' miRNA: 3'- -GGGCGGGGGCaa-UUaa--UAaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 116435 | 0.67 | 0.980214 |
Target: 5'- aCCgCGCCCCCGggGGgcucgCAGUGg- -3' miRNA: 3'- -GG-GCGGGGGCaaUUaauaaGUCGCgc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 144194 | 0.67 | 0.980214 |
Target: 5'- cCCCGaCCCCCGggc------CGGCGCc -3' miRNA: 3'- -GGGC-GGGGGCaauuaauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 19091 | 0.67 | 0.979769 |
Target: 5'- cCCCGCCCCCucccccuuGUcuucugcgGUUCGGCGg- -3' miRNA: 3'- -GGGCGGGGG--------CAauuaa---UAAGUCGCgc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 102918 | 0.67 | 0.979544 |
Target: 5'- cCUCGCCCUCGcgGGggaccggggcggCGGCGCGg -3' miRNA: 3'- -GGGCGGGGGCaaUUaauaa-------GUCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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