Results 61 - 80 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31128 | 5' | -51.7 | NC_006560.1 | + | 43501 | 0.67 | 0.979089 |
Target: 5'- gUCGCCCCCGcgccccccagccgCAGCGCc -3' miRNA: 3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 108379 | 0.67 | 0.978858 |
Target: 5'- gCCUGCuCCCCGaacacg---CGGCGCGc -3' miRNA: 3'- -GGGCG-GGGGCaauuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 13417 | 0.67 | 0.977916 |
Target: 5'- aCCGCCUCCG--------UCGGCGCc -3' miRNA: 3'- gGGCGGGGGCaauuaauaAGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 101928 | 0.67 | 0.977916 |
Target: 5'- gCCGCCCUCGUcgccgAU--GGCGCGc -3' miRNA: 3'- gGGCGGGGGCAauuaaUAagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 118547 | 0.67 | 0.977916 |
Target: 5'- aCCGCCCCgGcUGGcUGUggagcCGGCGCu -3' miRNA: 3'- gGGCGGGGgCaAUUaAUAa----GUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 119796 | 0.67 | 0.977916 |
Target: 5'- gCCCGaCCCCCGgcGGgcgcUGUUCuGCGa- -3' miRNA: 3'- -GGGC-GGGGGCaaUUa---AUAAGuCGCgc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 25738 | 0.67 | 0.977676 |
Target: 5'- cCCCGgCCCCGccacagaca-GGCGCGa -3' miRNA: 3'- -GGGCgGGGGCaauuaauaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 103134 | 0.67 | 0.976446 |
Target: 5'- gCgCGCCCCCGggcgccc-UCuGCGCGu -3' miRNA: 3'- -GgGCGGGGGCaauuaauaAGuCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 13793 | 0.67 | 0.975427 |
Target: 5'- aUCGCCCUCGg----UGUUCGGgGCc -3' miRNA: 3'- gGGCGGGGGCaauuaAUAAGUCgCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 14119 | 0.67 | 0.974109 |
Target: 5'- cCCCGCgCCCauggcggccagggUCAGCGCGc -3' miRNA: 3'- -GGGCGgGGGcaauuaaua----AGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 80029 | 0.68 | 0.973839 |
Target: 5'- gCCCGCCUCCGagacac---CGGCGCc -3' miRNA: 3'- -GGGCGGGGGCaauuaauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 120087 | 0.68 | 0.97274 |
Target: 5'- gCCCGCggagguCCCCGggGAccccUCGGCGUGc -3' miRNA: 3'- -GGGCG------GGGGCaaUUaauaAGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 125026 | 0.68 | 0.971893 |
Target: 5'- gCCGCCCaCCGgcggcugg-UGGCGCGg -3' miRNA: 3'- gGGCGGG-GGCaauuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 15508 | 0.68 | 0.971319 |
Target: 5'- cCCCGCCCCCGagucccggggcCAGC-CGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaa--GUCGcGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 112478 | 0.68 | 0.971028 |
Target: 5'- cCCUGCCCCUGUguccgaccgcGUUCcgggacGCGCGg -3' miRNA: 3'- -GGGCGGGGGCAauuaa-----UAAGu-----CGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 26167 | 0.68 | 0.969846 |
Target: 5'- cCCCGCCCCCGggGAgccugggGUccggaaUCugcccGUGCGa -3' miRNA: 3'- -GGGCGGGGGCaaUUaa-----UA------AGu----CGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 61357 | 0.68 | 0.969846 |
Target: 5'- cCCCuCCCCCGUUcu---UUC-GCGCGc -3' miRNA: 3'- -GGGcGGGGGCAAuuaauAAGuCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 38074 | 0.68 | 0.969846 |
Target: 5'- gCCgGgCCCCGggGGUgugUCGGUGCc -3' miRNA: 3'- -GGgCgGGGGCaaUUAauaAGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 53510 | 0.68 | 0.968007 |
Target: 5'- cCCCGCCCCCGcgcccg---CcGCGCc -3' miRNA: 3'- -GGGCGGGGGCaauuaauaaGuCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 96101 | 0.68 | 0.966739 |
Target: 5'- gCCGCCCCCGcgg------CGGCgGCGg -3' miRNA: 3'- gGGCGGGGGCaauuaauaaGUCG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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