Results 121 - 140 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31128 | 5' | -51.7 | NC_006560.1 | + | 77958 | 0.71 | 0.879696 |
Target: 5'- gCCGCCCCCGgccaccggccuccUGUUCGGCacGCGc -3' miRNA: 3'- gGGCGGGGGCaauua--------AUAAGUCG--CGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 15155 | 0.71 | 0.877514 |
Target: 5'- cCCCGCCCCCGgcg-----UCuuCGCGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaAGucGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 122085 | 0.71 | 0.877514 |
Target: 5'- gCgGCCCaCCGggAGUUGga-GGCGCGg -3' miRNA: 3'- gGgCGGG-GGCaaUUAAUaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 22272 | 0.71 | 0.873833 |
Target: 5'- gCCgCGCCCCCGccgaccccgggCGGCGCGc -3' miRNA: 3'- -GG-GCGGGGGCaauuaauaa--GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 78104 | 0.71 | 0.870095 |
Target: 5'- aCgGCCCCCGggcgcUGGUggcggUCAGCGUGc -3' miRNA: 3'- gGgCGGGGGCa----AUUAaua--AGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 72337 | 0.72 | 0.854594 |
Target: 5'- gCCgCGCCUCCGUcGGgggUGUggGGCGCGg -3' miRNA: 3'- -GG-GCGGGGGCAaUUa--AUAagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 50207 | 0.72 | 0.844064 |
Target: 5'- -aCGCCCCCGggcggcgg-CGGCGCGc -3' miRNA: 3'- ggGCGGGGGCaauuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 92651 | 0.72 | 0.838253 |
Target: 5'- gCCUGCCCgCGggccgGGUUcgUguGCGCGg -3' miRNA: 3'- -GGGCGGGgGCaa---UUAAuaAguCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 22840 | 0.72 | 0.829786 |
Target: 5'- cCCCGCCCCCGg---------GGCGCGu -3' miRNA: 3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 29798 | 0.73 | 0.806013 |
Target: 5'- cCCCGCCCCCGccccgcgaggUCuGCGCc -3' miRNA: 3'- -GGGCGGGGGCaauuaaua--AGuCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 35345 | 0.73 | 0.796894 |
Target: 5'- gCCGCCCCCGgcccccga--GGCGCGc -3' miRNA: 3'- gGGCGGGGGCaauuaauaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 103097 | 0.73 | 0.792277 |
Target: 5'- uCCCGCCCCCGcgGAcccggcggCGGaCGCGg -3' miRNA: 3'- -GGGCGGGGGCaaUUaauaa---GUC-GCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 85229 | 0.74 | 0.770568 |
Target: 5'- uUCCGCCUCCGUgacgccggcgcccgCGGCGCGg -3' miRNA: 3'- -GGGCGGGGGCAauuaauaa------GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 139257 | 0.74 | 0.756036 |
Target: 5'- gCCCGgaCCCCCGggGGcgcgcggUcgUCGGCGCGg -3' miRNA: 3'- -GGGC--GGGGGCaaUUa------AuaAGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 25412 | 0.74 | 0.739258 |
Target: 5'- cCCCGCCCCCGcccugggg--GGCGCGa -3' miRNA: 3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 141750 | 0.78 | 0.521006 |
Target: 5'- cCCCGCCCCCGcgcccgcgUUGGCGCGc -3' miRNA: 3'- -GGGCGGGGGCaauuaauaAGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 150432 | 0.79 | 0.479664 |
Target: 5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 103 | 0.79 | 0.479664 |
Target: 5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 140391 | 0.8 | 0.433563 |
Target: 5'- gUCGUCCCCGggGGggGUUCAGCGCc -3' miRNA: 3'- gGGCGGGGGCaaUUaaUAAGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 28621 | 1.12 | 0.005076 |
Target: 5'- gCCCGCCCCCGUUAAUUAUUCAGCGCGg -3' miRNA: 3'- -GGGCGGGGGCAAUUAAUAAGUCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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