miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 79716 0.66 0.988987
Target:  5'- gCCGCCCCCGU-------UCAG-GCc -3'
miRNA:   3'- gGGCGGGGGCAauuaauaAGUCgCGc -5'
31128 5' -51.7 NC_006560.1 + 79870 0.69 0.957618
Target:  5'- cCCCGCCCCCGccacgcc-UCGGCa-- -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGUCGcgc -5'
31128 5' -51.7 NC_006560.1 + 79977 0.66 0.99107
Target:  5'- cCCCGCCCCCcgauagccccgAGCGCc -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaagUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 80029 0.68 0.973839
Target:  5'- gCCCGCCUCCGagacac---CGGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 81933 0.66 0.986211
Target:  5'- aCCCGUUcugCCCGUUAAacuggaaggcgCAGCGCa -3'
miRNA:   3'- -GGGCGG---GGGCAAUUaauaa------GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 82218 0.67 0.984269
Target:  5'- cCCCGCUUCUGcgcGAgcaGUUCGGCGUGc -3'
miRNA:   3'- -GGGCGGGGGCaa-UUaa-UAAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 82432 0.7 0.930447
Target:  5'- cCCCGgCCCCGUccgcggcgUCGGUGCc -3'
miRNA:   3'- -GGGCgGGGGCAauuaaua-AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 83420 0.66 0.989808
Target:  5'- gCCCGCCUgCUGgacugcaccgagggUCGGCGCGg -3'
miRNA:   3'- -GGGCGGG-GGCaauuaaua------AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 83612 0.66 0.990455
Target:  5'- cCCCGCCUCCGcg-------CGGCgGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 85229 0.74 0.770568
Target:  5'- uUCCGCCUCCGUgacgccggcgcccgCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCAauuaauaa------GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 86876 0.71 0.883286
Target:  5'- cCCCGCCCCCGccgg-----CGGuCGCGu -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUC-GCGC- -5'
31128 5' -51.7 NC_006560.1 + 92360 0.66 0.986043
Target:  5'- gCCGCCgCCUGgucucugcgcggCGGCGCGg -3'
miRNA:   3'- gGGCGG-GGGCaauuaauaa---GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 92651 0.72 0.838253
Target:  5'- gCCUGCCCgCGggccgGGUUcgUguGCGCGg -3'
miRNA:   3'- -GGGCGGGgGCaa---UUAAuaAguCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 94421 0.67 0.980214
Target:  5'- aCCUGCCCCaCGccgccgGGUUcucggaggCGGCGCGg -3'
miRNA:   3'- -GGGCGGGG-GCaa----UUAAuaa-----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 94523 0.66 0.98994
Target:  5'- gCgGCCCCgCGgacgag--UCGGCGCGc -3'
miRNA:   3'- gGgCGGGG-GCaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 96101 0.68 0.966739
Target:  5'- gCCGCCCCCGcgg------CGGCgGCGg -3'
miRNA:   3'- gGGCGGGGGCaauuaauaaGUCG-CGC- -5'
31128 5' -51.7 NC_006560.1 + 99182 0.7 0.933562
Target:  5'- gCCgCGCCCCCGg-----AggCGGCGCc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaaUaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 100725 0.67 0.984269
Target:  5'- gCCGCUCCCGUa-------CAGCGCc -3'
miRNA:   3'- gGGCGGGGGCAauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 101220 0.66 0.987659
Target:  5'- cCUCGCCgaCCGggGucgUGUUC-GCGCGg -3'
miRNA:   3'- -GGGCGGg-GGCaaUua-AUAAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 101928 0.67 0.977916
Target:  5'- gCCGCCCUCGUcgccgAU--GGCGCGc -3'
miRNA:   3'- gGGCGGGGGCAauuaaUAagUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.