miRNA display CGI


Results 101 - 120 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 102918 0.67 0.979544
Target:  5'- cCUCGCCCUCGcgGGggaccggggcggCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaaUUaauaa-------GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 103016 0.7 0.925055
Target:  5'- cCCCGCCUCCGcgcccgg-UCGacGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGU--CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 103097 0.73 0.792277
Target:  5'- uCCCGCCCCCGcgGAcccggcggCGGaCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaaUUaauaa---GUC-GCGC- -5'
31128 5' -51.7 NC_006560.1 + 103134 0.67 0.976446
Target:  5'- gCgCGCCCCCGggcgccc-UCuGCGCGu -3'
miRNA:   3'- -GgGCGGGGGCaauuaauaAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 104767 0.69 0.952059
Target:  5'- cCCCGCCCCgGgcGGg-----GGCGCGg -3'
miRNA:   3'- -GGGCGGGGgCaaUUaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 106184 0.66 0.986043
Target:  5'- cCCCGCCCCCcgcucuucuggCGGCugGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaa-GUCG--CGC- -5'
31128 5' -51.7 NC_006560.1 + 108379 0.67 0.978858
Target:  5'- gCCUGCuCCCCGaacacg---CGGCGCGc -3'
miRNA:   3'- -GGGCG-GGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 110635 0.69 0.938555
Target:  5'- cCCCGCuCCuCCGUUcGUUcucucUCGGCGCc -3'
miRNA:   3'- -GGGCG-GG-GGCAAuUAAua---AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 111569 0.68 0.963755
Target:  5'- aCCGCCCCCaucaag----CAGCGCc -3'
miRNA:   3'- gGGCGGGGGcaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 112225 0.66 0.987505
Target:  5'- gCCCGCCUUCGggAGgaGUUCcuggagacguggcAGCGCc -3'
miRNA:   3'- -GGGCGGGGGCaaUUaaUAAG-------------UCGCGc -5'
31128 5' -51.7 NC_006560.1 + 112478 0.68 0.971028
Target:  5'- cCCUGCCCCUGUguccgaccgcGUUCcgggacGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCAauuaa-----UAAGu-----CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 114887 0.67 0.980214
Target:  5'- gCCGCUCCCGcauaaaaggcccggCGGCGCGc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa-----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 115958 0.66 0.990455
Target:  5'- aCCCcCCCCCGUccaacucaauaaAGCGCGu -3'
miRNA:   3'- -GGGcGGGGGCAauuaauaag---UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 116435 0.67 0.980214
Target:  5'- aCCgCGCCCCCGggGGgcucgCAGUGg- -3'
miRNA:   3'- -GG-GCGGGGGCaaUUaauaaGUCGCgc -5'
31128 5' -51.7 NC_006560.1 + 118379 0.66 0.990071
Target:  5'- gCCUggaGCCCCCGggGGgcgggcgGUUCgggcccgaccccggGGCGCGg -3'
miRNA:   3'- -GGG---CGGGGGCaaUUaa-----UAAG--------------UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 118547 0.67 0.977916
Target:  5'- aCCGCCCCgGcUGGcUGUggagcCGGCGCu -3'
miRNA:   3'- gGGCGGGGgCaAUUaAUAa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 119796 0.67 0.977916
Target:  5'- gCCCGaCCCCCGgcGGgcgcUGUUCuGCGa- -3'
miRNA:   3'- -GGGC-GGGGGCaaUUa---AUAAGuCGCgc -5'
31128 5' -51.7 NC_006560.1 + 120087 0.68 0.97274
Target:  5'- gCCCGCggagguCCCCGggGAccccUCGGCGUGc -3'
miRNA:   3'- -GGGCG------GGGGCaaUUaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 121548 0.66 0.989127
Target:  5'- uCCCGCCCCC---------UCAGCugggGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaAGUCG----CGC- -5'
31128 5' -51.7 NC_006560.1 + 122085 0.71 0.877514
Target:  5'- gCgGCCCaCCGggAGUUGga-GGCGCGg -3'
miRNA:   3'- gGgCGGG-GGCaaUUAAUaagUCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.