miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 52678 0.66 0.986708
Target:  5'- cCCCGCCCUgGUccccaagcUCcuGGCGCGg -3'
miRNA:   3'- -GGGCGGGGgCAauuaaua-AG--UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 52308 0.67 0.984269
Target:  5'- gCCUGCUCCCcacgccgGAggGgcucgUCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGcaa----UUaaUa----AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 52239 0.66 0.990581
Target:  5'- gCCUGgCCCCGgccggcg--CGGCGCa -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 52107 0.69 0.938555
Target:  5'- cCCCGCCgCCCGcgGAUauaa-GGCGCu -3'
miRNA:   3'- -GGGCGG-GGGCaaUUAauaagUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 51852 0.69 0.936588
Target:  5'- cCCgCGCCCCUGgggcg----CGGCGCGu -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 50255 0.68 0.959492
Target:  5'- gCCgCGCCUCCGggcggccgggcUCGGCGCGc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaaua---AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 50207 0.72 0.844064
Target:  5'- -aCGCCCCCGggcggcgg-CGGCGCGc -3'
miRNA:   3'- ggGCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 50169 0.69 0.956466
Target:  5'- aCCGCCCCCGcgccgccgUCGG-GCGu -3'
miRNA:   3'- gGGCGGGGGCaauuaauaAGUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 49847 0.7 0.919414
Target:  5'- uCCCGCCCCgGUcauuccggUC-GCGCGa -3'
miRNA:   3'- -GGGCGGGGgCAauuaaua-AGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 48841 0.68 0.963412
Target:  5'- gCCGCUCCUGUUcGUgca-CGGCGCc -3'
miRNA:   3'- gGGCGGGGGCAAuUAauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 47051 0.67 0.981713
Target:  5'- aCCGCCCCCGagagaccg-C-GCGCGc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaaGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 45750 0.66 0.991653
Target:  5'- uCgCGCCCCCGccaggGGUUGgcgugggggGGCGCGg -3'
miRNA:   3'- -GgGCGGGGGCaa---UUAAUaag------UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 45519 0.66 0.99107
Target:  5'- uCCgCGCCCCCGgccgccagcagCAcGCGCa -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaa--GU-CGCGc -5'
31128 5' -51.7 NC_006560.1 + 43501 0.67 0.979089
Target:  5'- gUCGCCCCCGcgccccccagccgCAGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 42122 0.67 0.983513
Target:  5'- -aCGCCCCCGgacgc----CAGCGCc -3'
miRNA:   3'- ggGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 41663 0.65 0.992205
Target:  5'- gCCCGCgUCCGgugccgucgcgggCGGCGCGu -3'
miRNA:   3'- -GGGCGgGGGCaauuaauaa----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 41478 0.66 0.987813
Target:  5'- aCCCGCCCCagcagc----UCgAGCGCGa -3'
miRNA:   3'- -GGGCGGGGgcaauuaauaAG-UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 39361 0.66 0.986211
Target:  5'- cCCCGgCCCCGgcggccc--CGGCGCc -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 39191 0.66 0.986708
Target:  5'- cCCCGCgCCCCGgucccucucGUUCcgcgGGCGUGu -3'
miRNA:   3'- -GGGCG-GGGGCaauuaa---UAAG----UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 38074 0.68 0.969846
Target:  5'- gCCgGgCCCCGggGGUgugUCGGUGCc -3'
miRNA:   3'- -GGgCgGGGGCaaUUAauaAGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.