miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 25412 0.74 0.739258
Target:  5'- cCCCGCCCCCGcccugggg--GGCGCGa -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 141750 0.78 0.521006
Target:  5'- cCCCGCCCCCGcgcccgcgUUGGCGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 150432 0.79 0.479664
Target:  5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 103 0.79 0.479664
Target:  5'- cCCCGCCCCCGcggccgcggcCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 140391 0.8 0.433563
Target:  5'- gUCGUCCCCGggGGggGUUCAGCGCc -3'
miRNA:   3'- gGGCGGGGGCaaUUaaUAAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 72337 0.72 0.854594
Target:  5'- gCCgCGCCUCCGUcGGgggUGUggGGCGCGg -3'
miRNA:   3'- -GG-GCGGGGGCAaUUa--AUAagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 78104 0.71 0.870095
Target:  5'- aCgGCCCCCGggcgcUGGUggcggUCAGCGUGc -3'
miRNA:   3'- gGgCGGGGGCa----AUUAaua--AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 6347 0.7 0.902301
Target:  5'- cCCCGCCCCgGcccgcccUUCGGgGCGg -3'
miRNA:   3'- -GGGCGGGGgCaauuaauAAGUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 27796 0.71 0.898385
Target:  5'- gCCCGgCCgCCGUUcc---UUCGGCGCGc -3'
miRNA:   3'- -GGGCgGG-GGCAAuuaauAAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 60274 0.71 0.89706
Target:  5'- gCCGCCCCCGggcc-----CGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 24057 0.71 0.895725
Target:  5'- cCCgCGCCCCCGgcccg----CGGCGCu -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 125511 0.71 0.893705
Target:  5'- cCCCGCCUCCGcgccggccgCGGUGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 755 0.71 0.886818
Target:  5'- cCCCGUCCCCcccccccg--CGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 56093 0.71 0.885412
Target:  5'- gCCCGCCCCCuccgcc----CAGCGCa -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 86876 0.71 0.883286
Target:  5'- cCCCGCCCCCGccgg-----CGGuCGCGu -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUC-GCGC- -5'
31128 5' -51.7 NC_006560.1 + 66938 0.71 0.880419
Target:  5'- cCCCGCCCCgGggcgggccUUgGGCGCGu -3'
miRNA:   3'- -GGGCGGGGgCaauuaau-AAgUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 77958 0.71 0.879696
Target:  5'- gCCGCCCCCGgccaccggccuccUGUUCGGCacGCGc -3'
miRNA:   3'- gGGCGGGGGCaauua--------AUAAGUCG--CGC- -5'
31128 5' -51.7 NC_006560.1 + 15155 0.71 0.877514
Target:  5'- cCCCGCCCCCGgcg-----UCuuCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGucGCGC- -5'
31128 5' -51.7 NC_006560.1 + 122085 0.71 0.877514
Target:  5'- gCgGCCCaCCGggAGUUGga-GGCGCGg -3'
miRNA:   3'- gGgCGGG-GGCaaUUAAUaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 22272 0.71 0.873833
Target:  5'- gCCgCGCCCCCGccgaccccgggCGGCGCGc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaa--GUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.