Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31128 | 5' | -51.7 | NC_006560.1 | + | 124300 | 0.68 | 0.95986 |
Target: 5'- gCCGCCCCaCGUgcaggcgGAgacGUUCgAGCGCc -3' miRNA: 3'- gGGCGGGG-GCAa------UUaa-UAAG-UCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 662 | 0.68 | 0.96095 |
Target: 5'- uUCGCaCCCCGgcgcgcccgCGGCGCGg -3' miRNA: 3'- gGGCG-GGGGCaauuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 13652 | 0.68 | 0.96095 |
Target: 5'- cCCCGCCCgCCGagacgcacgCgAGCGCGa -3' miRNA: 3'- -GGGCGGG-GGCaauuaauaaG-UCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 48841 | 0.68 | 0.963412 |
Target: 5'- gCCGCUCCUGUUcGUgca-CGGCGCc -3' miRNA: 3'- gGGCGGGGGCAAuUAauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 111569 | 0.68 | 0.963755 |
Target: 5'- aCCGCCCCCaucaag----CAGCGCc -3' miRNA: 3'- gGGCGGGGGcaauuaauaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 134245 | 0.69 | 0.942372 |
Target: 5'- gCCCGCCCCCGcggcccgcccgAAgccgggCAGgGCGg -3' miRNA: 3'- -GGGCGGGGGCaa---------UUaauaa-GUCgCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 142171 | 0.69 | 0.938555 |
Target: 5'- cCCCGCCCCgCGcgggcccUAAUggga-GGCGCGg -3' miRNA: 3'- -GGGCGGGG-GCa------AUUAauaagUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 23366 | 0.7 | 0.914125 |
Target: 5'- gCCGCCCCCGgccucgccggcuaCGGCGCc -3' miRNA: 3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 68646 | 0.7 | 0.917673 |
Target: 5'- uCCCGgCCCCGUUcGUccaggagggccugcgGUUCcuGGCGCGg -3' miRNA: 3'- -GGGCgGGGGCAAuUAa--------------UAAG--UCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 49847 | 0.7 | 0.919414 |
Target: 5'- uCCCGCCCCgGUcauuccggUC-GCGCGa -3' miRNA: 3'- -GGGCGGGGgCAauuaaua-AGuCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 103016 | 0.7 | 0.925055 |
Target: 5'- cCCCGCCUCCGcgcccgg-UCGacGCGCGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaAGU--CGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 27367 | 0.7 | 0.92832 |
Target: 5'- aCCGCCCcgCCGggAAacg--CGGCGCGg -3' miRNA: 3'- gGGCGGG--GGCaaUUaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 82432 | 0.7 | 0.930447 |
Target: 5'- cCCCGgCCCCGUccgcggcgUCGGUGCc -3' miRNA: 3'- -GGGCgGGGGCAauuaaua-AGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 58401 | 0.7 | 0.933562 |
Target: 5'- -gCGCCCCCGggGGccgcgUCGGUGCu -3' miRNA: 3'- ggGCGGGGGCaaUUaaua-AGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 99182 | 0.7 | 0.933562 |
Target: 5'- gCCgCGCCCCCGg-----AggCGGCGCc -3' miRNA: 3'- -GG-GCGGGGGCaauuaaUaaGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 51852 | 0.69 | 0.936588 |
Target: 5'- cCCgCGCCCCUGgggcg----CGGCGCGu -3' miRNA: 3'- -GG-GCGGGGGCaauuaauaaGUCGCGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 22385 | 0.69 | 0.938067 |
Target: 5'- cCCCGCCCCCGgcucggacccCGGCuCGg -3' miRNA: 3'- -GGGCGGGGGCaauuaauaa-GUCGcGC- -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 52107 | 0.69 | 0.938555 |
Target: 5'- cCCCGCCgCCCGcgGAUauaa-GGCGCu -3' miRNA: 3'- -GGGCGG-GGGCaaUUAauaagUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 69672 | 0.69 | 0.938555 |
Target: 5'- gCCCGCcaCCCCGggg-----UCGGCGCu -3' miRNA: 3'- -GGGCG--GGGGCaauuaauaAGUCGCGc -5' |
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31128 | 5' | -51.7 | NC_006560.1 | + | 110635 | 0.69 | 0.938555 |
Target: 5'- cCCCGCuCCuCCGUUcGUUcucucUCGGCGCc -3' miRNA: 3'- -GGGCG-GG-GGCAAuUAAua---AGUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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