miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 3' -54.5 NC_006560.1 + 23808 0.66 0.946762
Target:  5'- --gCCCGcgGCAGGUGCgCUCCgUCGGc -3'
miRNA:   3'- cagGGGUa-CGUUUACGaGAGG-AGCCc -5'
31129 3' -54.5 NC_006560.1 + 47081 0.66 0.937478
Target:  5'- --aCCCGUacGCGAccgGCUCgUCCUCGGa -3'
miRNA:   3'- cagGGGUA--CGUUua-CGAG-AGGAGCCc -5'
31129 3' -54.5 NC_006560.1 + 31717 0.67 0.921721
Target:  5'- -aCCCCGguggGCGGcAUGCUCUUCgagcaGGGc -3'
miRNA:   3'- caGGGGUa---CGUU-UACGAGAGGag---CCC- -5'
31129 3' -54.5 NC_006560.1 + 5545 0.67 0.915978
Target:  5'- cGUCCCCccgGcCGGAcccgucgaugucUGCU-UCCUCGGGg -3'
miRNA:   3'- -CAGGGGua-C-GUUU------------ACGAgAGGAGCCC- -5'
31129 3' -54.5 NC_006560.1 + 112033 0.67 0.903762
Target:  5'- -cCCCCGcgGCAccUGUUCUUCUgGGGc -3'
miRNA:   3'- caGGGGUa-CGUuuACGAGAGGAgCCC- -5'
31129 3' -54.5 NC_006560.1 + 77525 0.67 0.903762
Target:  5'- --gCCCAggGCGAcgGCUuccggCUCUUCGGGc -3'
miRNA:   3'- cagGGGUa-CGUUuaCGA-----GAGGAGCCC- -5'
31129 3' -54.5 NC_006560.1 + 139823 0.68 0.869089
Target:  5'- aUCCCagccgaucugggCGUGCGAGgcggGCUCUCCgcggCGGa -3'
miRNA:   3'- cAGGG------------GUACGUUUa---CGAGAGGa---GCCc -5'
31129 3' -54.5 NC_006560.1 + 4543 0.68 0.869089
Target:  5'- -gCCCCGgggGCGGggGCUCggCCcCGGGc -3'
miRNA:   3'- caGGGGUa--CGUUuaCGAGa-GGaGCCC- -5'
31129 3' -54.5 NC_006560.1 + 105931 0.69 0.845628
Target:  5'- cGUCCCCGccGCAGAgacccucGCcCUCgUCGGGc -3'
miRNA:   3'- -CAGGGGUa-CGUUUa------CGaGAGgAGCCC- -5'
31129 3' -54.5 NC_006560.1 + 78797 0.69 0.837401
Target:  5'- uGUCCCCcgGCGuggagGUUCUCgC-CGGGc -3'
miRNA:   3'- -CAGGGGuaCGUuua--CGAGAG-GaGCCC- -5'
31129 3' -54.5 NC_006560.1 + 145491 0.69 0.836568
Target:  5'- uGUCCC--UGCGGGgggcucuguccccUGCUCUCC-CGGGc -3'
miRNA:   3'- -CAGGGguACGUUU-------------ACGAGAGGaGCCC- -5'
31129 3' -54.5 NC_006560.1 + 69777 0.73 0.644339
Target:  5'- cGUCCCCcccGCc-GUGCUCUCCgacccCGGGu -3'
miRNA:   3'- -CAGGGGua-CGuuUACGAGAGGa----GCCC- -5'
31129 3' -54.5 NC_006560.1 + 128630 0.75 0.492049
Target:  5'- aGUCCCUGggGCGGGUGCggacgCUCCgccgCGGGg -3'
miRNA:   3'- -CAGGGGUa-CGUUUACGa----GAGGa---GCCC- -5'
31129 3' -54.5 NC_006560.1 + 16974 0.76 0.45401
Target:  5'- aGUCCCCcagGCAGAUGU---CCUCGGGg -3'
miRNA:   3'- -CAGGGGua-CGUUUACGagaGGAGCCC- -5'
31129 3' -54.5 NC_006560.1 + 28894 1.11 0.002776
Target:  5'- gGUCCCCAUGCAAAUGCUCUCCUCGGGg -3'
miRNA:   3'- -CAGGGGUACGUUUACGAGAGGAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.