Results 21 - 40 of 444 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31129 | 5' | -63.4 | NC_006560.1 | + | 57935 | 0.77 | 0.134093 |
Target: 5'- uCGCCCGCCUUC-CCccCGUGcGCGCCCg -3' miRNA: 3'- -GCGGGCGGGGGaGGuuGUAC-CGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 35997 | 0.77 | 0.134093 |
Target: 5'- uCGCCC-CCCCCUCCGGaggggguggGGgGCCCg -3' miRNA: 3'- -GCGGGcGGGGGAGGUUgua------CCgCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 77696 | 0.79 | 0.092093 |
Target: 5'- gCGCUCGCCCCgCUcgcggagCCGGCG-GGCGCCCg -3' miRNA: 3'- -GCGGGCGGGG-GA-------GGUUGUaCCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 80027 | 0.8 | 0.081379 |
Target: 5'- gCGCCCGCCUCCga-GACAccGGCGCCCc -3' miRNA: 3'- -GCGGGCGGGGGaggUUGUa-CCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 53544 | 0.8 | 0.081173 |
Target: 5'- gGCCCGCCCCggCUCCAcgcccgcgugcgcGCGUcGCGCCCg -3' miRNA: 3'- gCGGGCGGGG--GAGGU-------------UGUAcCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 77135 | 0.8 | 0.079344 |
Target: 5'- cCGCCCGCgCCCCUgcucgCCGACAUccGCGCCCu -3' miRNA: 3'- -GCGGGCG-GGGGA-----GGUUGUAc-CGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 145215 | 0.8 | 0.077357 |
Target: 5'- gGCCC-CCCCUUCCuGC-UGGCGCCCc -3' miRNA: 3'- gCGGGcGGGGGAGGuUGuACCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 30607 | 0.8 | 0.075418 |
Target: 5'- gCGCCCGCCCCCcgCCGACu---CGCCCa -3' miRNA: 3'- -GCGGGCGGGGGa-GGUUGuaccGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 12671 | 0.81 | 0.071679 |
Target: 5'- gCGCCgGCcagCCCCgcgCCGACgAUGGCGCCCg -3' miRNA: 3'- -GCGGgCG---GGGGa--GGUUG-UACCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 90279 | 0.81 | 0.064729 |
Target: 5'- gGCCCGCCUCCUCUucgaggccguCGUGGgGCCCg -3' miRNA: 3'- gCGGGCGGGGGAGGuu--------GUACCgCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 114975 | 0.79 | 0.097083 |
Target: 5'- cCGCCCGCUCCCUCCc-----GCGCCCg -3' miRNA: 3'- -GCGGGCGGGGGAGGuuguacCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 56092 | 0.79 | 0.099549 |
Target: 5'- gGCCCGCCCCCUCCGcccagcGCAcccgcuCGCCCg -3' miRNA: 3'- gCGGGCGGGGGAGGU------UGUacc---GCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 22270 | 0.77 | 0.134093 |
Target: 5'- aCGCCgCGCCCCCgCCGACcccgggcGGCGCgCCg -3' miRNA: 3'- -GCGG-GCGGGGGaGGUUGua-----CCGCG-GG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 118263 | 0.77 | 0.130836 |
Target: 5'- cCGCCgCGCCgCC-CCGGcCGUGGCGUCCg -3' miRNA: 3'- -GCGG-GCGGgGGaGGUU-GUACCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 144110 | 0.77 | 0.127338 |
Target: 5'- cCGCCgGCCCCugccuggCUCCGGCGgccgcggcGGCGCCCc -3' miRNA: 3'- -GCGGgCGGGG-------GAGGUUGUa-------CCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 128716 | 0.77 | 0.121499 |
Target: 5'- aCGCCCauGCUCCUgaaCCAcguCGUGGCGCCCg -3' miRNA: 3'- -GCGGG--CGGGGGa--GGUu--GUACCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 22213 | 0.77 | 0.121499 |
Target: 5'- gGCCCGCCCCCgcggccCCGGCccGG-GCCCc -3' miRNA: 3'- gCGGGCGGGGGa-----GGUUGuaCCgCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 21019 | 0.78 | 0.118527 |
Target: 5'- gGCCCGCCCCgaagggcgggCCGggGCggGGCGCCCg -3' miRNA: 3'- gCGGGCGGGGga--------GGU--UGuaCCGCGGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 5220 | 0.78 | 0.107303 |
Target: 5'- gGgCCGUCUCCUCCAcCAUGGCGgCCa -3' miRNA: 3'- gCgGGCGGGGGAGGUuGUACCGCgGG- -5' |
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31129 | 5' | -63.4 | NC_006560.1 | + | 60199 | 0.78 | 0.104657 |
Target: 5'- aGCaCCGCCUUCUCCAACAUG-CGCCg -3' miRNA: 3'- gCG-GGCGGGGGAGGUUGUACcGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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