miRNA display CGI


Results 41 - 60 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 77135 0.8 0.079344
Target:  5'- cCGCCCGCgCCCCUgcucgCCGACAUccGCGCCCu -3'
miRNA:   3'- -GCGGGCG-GGGGA-----GGUUGUAc-CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 145215 0.8 0.077357
Target:  5'- gGCCC-CCCCUUCCuGC-UGGCGCCCc -3'
miRNA:   3'- gCGGGcGGGGGAGGuUGuACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 30607 0.8 0.075418
Target:  5'- gCGCCCGCCCCCcgCCGACu---CGCCCa -3'
miRNA:   3'- -GCGGGCGGGGGa-GGUUGuaccGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 12671 0.81 0.071679
Target:  5'- gCGCCgGCcagCCCCgcgCCGACgAUGGCGCCCg -3'
miRNA:   3'- -GCGGgCG---GGGGa--GGUUG-UACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 90279 0.81 0.064729
Target:  5'- gGCCCGCCUCCUCUucgaggccguCGUGGgGCCCg -3'
miRNA:   3'- gCGGGCGGGGGAGGuu--------GUACCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 22213 0.77 0.121499
Target:  5'- gGCCCGCCCCCgcggccCCGGCccGG-GCCCc -3'
miRNA:   3'- gCGGGCGGGGGa-----GGUUGuaCCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 128716 0.77 0.121499
Target:  5'- aCGCCCauGCUCCUgaaCCAcguCGUGGCGCCCg -3'
miRNA:   3'- -GCGGG--CGGGGGa--GGUu--GUACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 11004 0.76 0.144315
Target:  5'- gGCCaccaCGCCCCCUCC--CccGGCGCCCc -3'
miRNA:   3'- gCGG----GCGGGGGAGGuuGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 27442 0.76 0.144315
Target:  5'- gCGUCCGCgUCCUCCcGC--GGCGCCCg -3'
miRNA:   3'- -GCGGGCGgGGGAGGuUGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 24101 0.76 0.144315
Target:  5'- gGCCCGaCCCCCg-CGGCGgcUGGCGCCg -3'
miRNA:   3'- gCGGGC-GGGGGagGUUGU--ACCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 15401 0.76 0.144315
Target:  5'- -cUCCGCCCCCUCCGGCAcGGacagcagGCCCc -3'
miRNA:   3'- gcGGGCGGGGGAGGUUGUaCCg------CGGG- -5'
31129 5' -63.4 NC_006560.1 + 5617 0.76 0.140831
Target:  5'- cCGCCCGCCucauauacCCCggCCGGCGacgggcGGCGCCCg -3'
miRNA:   3'- -GCGGGCGG--------GGGa-GGUUGUa-----CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 100403 0.76 0.140831
Target:  5'- gCGCCuCGCCCuCCUCCAggcGCcgGGuCGCCa -3'
miRNA:   3'- -GCGG-GCGGG-GGAGGU---UGuaCC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 55709 0.76 0.140831
Target:  5'- gGCCCGCCCgcgCCUCCGACGUcagggucgaGGUGgCCg -3'
miRNA:   3'- gCGGGCGGG---GGAGGUUGUA---------CCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 24054 0.77 0.137424
Target:  5'- cCGCCCGCgCCC-CCGGCccgcGGCGCUCa -3'
miRNA:   3'- -GCGGGCGgGGGaGGUUGua--CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 57935 0.77 0.134093
Target:  5'- uCGCCCGCCUUC-CCccCGUGcGCGCCCg -3'
miRNA:   3'- -GCGGGCGGGGGaGGuuGUAC-CGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 35997 0.77 0.134093
Target:  5'- uCGCCC-CCCCCUCCGGaggggguggGGgGCCCg -3'
miRNA:   3'- -GCGGGcGGGGGAGGUUgua------CCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 22270 0.77 0.134093
Target:  5'- aCGCCgCGCCCCCgCCGACcccgggcGGCGCgCCg -3'
miRNA:   3'- -GCGG-GCGGGGGaGGUUGua-----CCGCG-GG- -5'
31129 5' -63.4 NC_006560.1 + 118263 0.77 0.130836
Target:  5'- cCGCCgCGCCgCC-CCGGcCGUGGCGUCCg -3'
miRNA:   3'- -GCGG-GCGGgGGaGGUU-GUACCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 144110 0.77 0.127338
Target:  5'- cCGCCgGCCCCugccuggCUCCGGCGgccgcggcGGCGCCCc -3'
miRNA:   3'- -GCGGgCGGGG-------GAGGUUGUa-------CCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.