miRNA display CGI


Results 21 - 40 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 141572 0.66 0.599527
Target:  5'- gGCCCGgcucgaCCCCggCGGCGgcggccccGGUGCCCg -3'
miRNA:   3'- gCGGGCg-----GGGGagGUUGUa-------CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 27113 0.66 0.599527
Target:  5'- gCGaCCCgGCCUCCaCCGagacGCAguUGGgGCCCg -3'
miRNA:   3'- -GC-GGG-CGGGGGaGGU----UGU--ACCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 49920 0.66 0.599527
Target:  5'- cCGCCCccGCCCgCCgcgCCGAguCcgGGCGUgCg -3'
miRNA:   3'- -GCGGG--CGGG-GGa--GGUU--GuaCCGCGgG- -5'
31129 5' -63.4 NC_006560.1 + 73884 0.66 0.599527
Target:  5'- aCGCCCGCgaCCggcgguaCCAcgucGCcucGGCGCCCg -3'
miRNA:   3'- -GCGGGCGggGGa------GGU----UGua-CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 27568 0.66 0.599527
Target:  5'- gCGCCCGCCggaagcugaggCCg-CCGGCGcgcgggugGGCGCUCg -3'
miRNA:   3'- -GCGGGCGG-----------GGgaGGUUGUa-------CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 102895 0.66 0.599527
Target:  5'- gGCCCGCguggCUCUCCGGCGcuccuCGCCCu -3'
miRNA:   3'- gCGGGCGg---GGGAGGUUGUacc--GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 483 0.66 0.598559
Target:  5'- cCGuCCCgGCCCCCgucggucucgcucUCCcGCcacgGGCGCCg -3'
miRNA:   3'- -GC-GGG-CGGGGG-------------AGGuUGua--CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 113488 0.66 0.598559
Target:  5'- cCGCCUccacggcgaacauGCgCCUCUUCGACggGGCGCUUc -3'
miRNA:   3'- -GCGGG-------------CG-GGGGAGGUUGuaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 139890 0.66 0.598559
Target:  5'- aGCaCGCCCCCgcgggcccacuuuUCCAGacaccCGUGGcCGCUCa -3'
miRNA:   3'- gCGgGCGGGGG-------------AGGUU-----GUACC-GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 73950 0.66 0.592755
Target:  5'- -cCCUGCCCgCCUUCGACgcgcgcgugcgggagGUGGCggcgcggGCCCg -3'
miRNA:   3'- gcGGGCGGG-GGAGGUUG---------------UACCG-------CGGG- -5'
31129 5' -63.4 NC_006560.1 + 66963 0.66 0.589857
Target:  5'- gCGUCgaGCCCCagcagCCAgaGCGUGGUGgCCg -3'
miRNA:   3'- -GCGGg-CGGGGga---GGU--UGUACCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 33346 0.66 0.589857
Target:  5'- cCGCCgCGgCCCCgcggCCGuCuc-GCGCCCg -3'
miRNA:   3'- -GCGG-GCgGGGGa---GGUuGuacCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 45515 0.66 0.589857
Target:  5'- gGCCuccgCGCCCCCggccgCCAGCAgcacGCGCa- -3'
miRNA:   3'- gCGG----GCGGGGGa----GGUUGUac--CGCGgg -5'
31129 5' -63.4 NC_006560.1 + 118794 0.66 0.589857
Target:  5'- gCGCUggaggCGCCCCUgcgCCAcgcGCGgcccguccUGGCGCCg -3'
miRNA:   3'- -GCGG-----GCGGGGGa--GGU---UGU--------ACCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 100224 0.66 0.589857
Target:  5'- gCGCCCGCCgagCCCgagCuCGGCcucGGCGgCCu -3'
miRNA:   3'- -GCGGGCGG---GGGa--G-GUUGua-CCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 124054 0.66 0.589857
Target:  5'- cCGaCCCGCCUCC-CCccCGUcccccGGCcGCCCg -3'
miRNA:   3'- -GC-GGGCGGGGGaGGuuGUA-----CCG-CGGG- -5'
31129 5' -63.4 NC_006560.1 + 74004 0.66 0.589857
Target:  5'- cCGcCCCGCCCCCgcucgCCAcgaGCcccGCGgCCg -3'
miRNA:   3'- -GC-GGGCGGGGGa----GGU---UGuacCGCgGG- -5'
31129 5' -63.4 NC_006560.1 + 18020 0.66 0.589857
Target:  5'- aCGCgCCGCCCgCgacggCUAGCGcGGcCGCCg -3'
miRNA:   3'- -GCG-GGCGGGgGa----GGUUGUaCC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 127490 0.66 0.589857
Target:  5'- gGCUCGCCgCCCgCgGGCGcGGCggagGCCCu -3'
miRNA:   3'- gCGGGCGG-GGGaGgUUGUaCCG----CGGG- -5'
31129 5' -63.4 NC_006560.1 + 144700 0.66 0.588891
Target:  5'- cCGCCCaCCCCCUgcccucgCCGGCcuuccCGCCCa -3'
miRNA:   3'- -GCGGGcGGGGGA-------GGUUGuacc-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.