miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3113 3' -51.8 NC_001493.1 + 27271 0.66 0.98706
Target:  5'- gGugGUcUCUGUCaCUCAcCGGCGugCCCg -3'
miRNA:   3'- -CugCAaGGGUAG-GAGU-GUUGUugGGG- -5'
3113 3' -51.8 NC_001493.1 + 46767 0.66 0.985364
Target:  5'- -cCGgaUCCAUCUUCGaguuCGACCCCc -3'
miRNA:   3'- cuGCaaGGGUAGGAGUguu-GUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 97606 0.66 0.985364
Target:  5'- uGAUGUgCCCAUgCUCcGCAGuguucuGCCCCa -3'
miRNA:   3'- -CUGCAaGGGUAgGAG-UGUUgu----UGGGG- -5'
3113 3' -51.8 NC_001493.1 + 101937 0.66 0.985364
Target:  5'- gGACGUUCuCCugauuaagCCgccCAaGGCGGCCCCa -3'
miRNA:   3'- -CUGCAAG-GGua------GGa--GUgUUGUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 107108 0.66 0.984824
Target:  5'- -uUGgUCCCGgccgcaaauggcuuaCUCGCAACGGCCCUg -3'
miRNA:   3'- cuGCaAGGGUag-------------GAGUGUUGUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 52929 0.66 0.983504
Target:  5'- cGGCGaUCCUaucgAUCCgUgACGAgAACCCCc -3'
miRNA:   3'- -CUGCaAGGG----UAGG-AgUGUUgUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 30919 0.66 0.983504
Target:  5'- cGGCGUggaCCGUCC-CGguGCGGCCgCg -3'
miRNA:   3'- -CUGCAag-GGUAGGaGUguUGUUGGgG- -5'
3113 3' -51.8 NC_001493.1 + 24481 0.66 0.983504
Target:  5'- gGugGUguaCCgCGUaaaCCUCACGAgGGCCUCg -3'
miRNA:   3'- -CugCAa--GG-GUA---GGAGUGUUgUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 71800 0.66 0.979254
Target:  5'- cGACGUUCUCAgugUgCUCGgGGCAcauuACCCg -3'
miRNA:   3'- -CUGCAAGGGU---AgGAGUgUUGU----UGGGg -5'
3113 3' -51.8 NC_001493.1 + 53701 0.67 0.974242
Target:  5'- cGCGUUCCUG-CCUaucaUACAAgGACCCg -3'
miRNA:   3'- cUGCAAGGGUaGGA----GUGUUgUUGGGg -5'
3113 3' -51.8 NC_001493.1 + 124483 0.67 0.974242
Target:  5'- gGACcUUCCCugagcgCCaugUCuAUAACAGCCCCg -3'
miRNA:   3'- -CUGcAAGGGua----GG---AG-UGUUGUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 8929 0.67 0.974242
Target:  5'- gGACcUUCCCugagcgCCaugUCuAUAACAGCCCCg -3'
miRNA:   3'- -CUGcAAGGGua----GG---AG-UGUUGUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 30202 0.67 0.97143
Target:  5'- ----aUUCCGUUaUCACGugGACCCCg -3'
miRNA:   3'- cugcaAGGGUAGgAGUGUugUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 33857 0.67 0.971429
Target:  5'- aGCGUcacacaugaaugUCCCuUUUUCACGGCugccAACCCCg -3'
miRNA:   3'- cUGCA------------AGGGuAGGAGUGUUG----UUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 34609 0.67 0.971429
Target:  5'- aGACGg--CCGUCCUCGCG---ACCCa -3'
miRNA:   3'- -CUGCaagGGUAGGAGUGUuguUGGGg -5'
3113 3' -51.8 NC_001493.1 + 9795 0.67 0.968403
Target:  5'- aGCGcgCCgAUCaUCACcaggacGACGACCCCg -3'
miRNA:   3'- cUGCaaGGgUAGgAGUG------UUGUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 29404 0.67 0.968403
Target:  5'- cGCGga-CCAcCCuUCGCAGCGGCCuCCg -3'
miRNA:   3'- cUGCaagGGUaGG-AGUGUUGUUGG-GG- -5'
3113 3' -51.8 NC_001493.1 + 31649 0.67 0.968403
Target:  5'- -cCGaUCCgCGuUCCUCACcGCGACCaCCg -3'
miRNA:   3'- cuGCaAGG-GU-AGGAGUGuUGUUGG-GG- -5'
3113 3' -51.8 NC_001493.1 + 125349 0.67 0.968403
Target:  5'- aGCGcgCCgAUCaUCACcaggacGACGACCCCg -3'
miRNA:   3'- cUGCaaGGgUAGgAGUG------UUGUUGGGG- -5'
3113 3' -51.8 NC_001493.1 + 67697 0.67 0.968403
Target:  5'- -gUGUUCCCAagauacucgggUCCUUuauccgcgaguaGCGcCAACCCCg -3'
miRNA:   3'- cuGCAAGGGU-----------AGGAG------------UGUuGUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.