miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3113 5' -53 NC_001493.1 + 63733 0.66 0.963336
Target:  5'- gCGGGCGucGCCGGUGUG-GUGGuCAccGCGg -3'
miRNA:   3'- -GUCUGC--CGGCUAUACgCACCuGU--UGU- -5'
3113 5' -53 NC_001493.1 + 43144 0.66 0.959745
Target:  5'- gUAGACGGUCGcuuucGCGUGG-CGAUg -3'
miRNA:   3'- -GUCUGCCGGCuaua-CGCACCuGUUGu -5'
3113 5' -53 NC_001493.1 + 35327 0.66 0.959745
Target:  5'- cCGGugGGCUGAUGaGCGagcccaugaccgUGGACGuCGu -3'
miRNA:   3'- -GUCugCCGGCUAUaCGC------------ACCUGUuGU- -5'
3113 5' -53 NC_001493.1 + 58656 0.67 0.942987
Target:  5'- cCGGuCGGUCGGcccGCG-GGACGACAc -3'
miRNA:   3'- -GUCuGCCGGCUauaCGCaCCUGUUGU- -5'
3113 5' -53 NC_001493.1 + 63778 0.67 0.93818
Target:  5'- gCGGGCGucGCCGAUGUG-GUGGuCAccGCGg -3'
miRNA:   3'- -GUCUGC--CGGCUAUACgCACCuGU--UGU- -5'
3113 5' -53 NC_001493.1 + 79035 0.67 0.93818
Target:  5'- -cGGCGGUCGGUucAUGC-UGGAUGACc -3'
miRNA:   3'- guCUGCCGGCUA--UACGcACCUGUUGu -5'
3113 5' -53 NC_001493.1 + 73557 0.67 0.93818
Target:  5'- uGGACaaGGCCGAUcUGUGggGGaACGACGg -3'
miRNA:   3'- gUCUG--CCGGCUAuACGCa-CC-UGUUGU- -5'
3113 5' -53 NC_001493.1 + 36242 0.67 0.93312
Target:  5'- uCAGugGGgCGGguUGCGcGGACGAUu -3'
miRNA:   3'- -GUCugCCgGCUauACGCaCCUGUUGu -5'
3113 5' -53 NC_001493.1 + 70723 0.67 0.93312
Target:  5'- aGGGCGGCC-AUGUaCGcacUGGGCGACGa -3'
miRNA:   3'- gUCUGCCGGcUAUAcGC---ACCUGUUGU- -5'
3113 5' -53 NC_001493.1 + 97786 0.7 0.836455
Target:  5'- -uGA-GGUCGAUAUGCGUgGGGCAgaACAc -3'
miRNA:   3'- guCUgCCGGCUAUACGCA-CCUGU--UGU- -5'
3113 5' -53 NC_001493.1 + 126310 0.7 0.810137
Target:  5'- uGGAUGGCCG-UGU-CGUGGGCAucgGCGa -3'
miRNA:   3'- gUCUGCCGGCuAUAcGCACCUGU---UGU- -5'
3113 5' -53 NC_001493.1 + 10756 0.7 0.810137
Target:  5'- uGGAUGGCCG-UGU-CGUGGGCAucgGCGa -3'
miRNA:   3'- gUCUGCCGGCuAUAcGCACCUGU---UGU- -5'
3113 5' -53 NC_001493.1 + 95610 0.7 0.809232
Target:  5'- gAGACGGgugguggaccuccCCGAguacaGUGCGUGGACAcCGg -3'
miRNA:   3'- gUCUGCC-------------GGCUa----UACGCACCUGUuGU- -5'
3113 5' -53 NC_001493.1 + 102973 1.09 0.004782
Target:  5'- cCAGACGGCCGAUAUGCGUGGACAACAa -3'
miRNA:   3'- -GUCUGCCGGCUAUACGCACCUGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.