miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 21306 0.66 0.957613
Target:  5'- cGCGAg-CGGGCG-CGGCGAUGcuaACGAg -3'
miRNA:   3'- -UGCUgaGCCUGCaGCUGCUGC---UGCUg -5'
31130 3' -55.3 NC_006560.1 + 124759 0.66 0.957613
Target:  5'- gACGAC-CGcGACGcCGAgGGgGGCGAg -3'
miRNA:   3'- -UGCUGaGC-CUGCaGCUgCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 144358 0.66 0.957613
Target:  5'- gACGGCcgCGGGgcCG-CGGCGGCaggGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCU--GCaGCUGCUG---CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 31953 0.66 0.957613
Target:  5'- gGCGGC-CGGGCGggGGCG-CGA-GACa -3'
miRNA:   3'- -UGCUGaGCCUGCagCUGCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 51968 0.66 0.957613
Target:  5'- cACGugUcCGGGCGgcgGGCGGCGGgccugcCGGCg -3'
miRNA:   3'- -UGCugA-GCCUGCag-CUGCUGCU------GCUG- -5'
31130 3' -55.3 NC_006560.1 + 11696 0.66 0.957613
Target:  5'- gGCGGgaUCGG-CGUCG-CGGgGACGAa -3'
miRNA:   3'- -UGCUg-AGCCuGCAGCuGCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 53907 0.66 0.957613
Target:  5'- aGCGACUCGGAggagccCGUCuACGAgGA-GAUc -3'
miRNA:   3'- -UGCUGAGCCU------GCAGcUGCUgCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 102817 0.66 0.953838
Target:  5'- uCGAgUCGcGCGcCGGCGACGcgagggggGCGGCg -3'
miRNA:   3'- uGCUgAGCcUGCaGCUGCUGC--------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 32158 0.66 0.953838
Target:  5'- -gGGC-CGGGCGUcccCGGCGcCGAgGGCg -3'
miRNA:   3'- ugCUGaGCCUGCA---GCUGCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 15033 0.66 0.953838
Target:  5'- uGCGGCgUCGGagacucGCGcCgGGgGGCGACGGCg -3'
miRNA:   3'- -UGCUG-AGCC------UGCaG-CUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 32934 0.66 0.953838
Target:  5'- -gGGCagGGGgcCGUCGccgcCGGCGGCGACg -3'
miRNA:   3'- ugCUGagCCU--GCAGCu---GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 129445 0.66 0.953838
Target:  5'- uGCG-CUgGGAC-UCGGCGGCGGgGGg -3'
miRNA:   3'- -UGCuGAgCCUGcAGCUGCUGCUgCUg -5'
31130 3' -55.3 NC_006560.1 + 12595 0.66 0.953838
Target:  5'- cACGuGCUUGG-CGgccgcgCGGCcGCGACGGCg -3'
miRNA:   3'- -UGC-UGAGCCuGCa-----GCUGcUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 100631 0.66 0.953838
Target:  5'- aGCGGacgCGGugGUCcACGuuGAUGGCg -3'
miRNA:   3'- -UGCUga-GCCugCAGcUGCugCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 147982 0.66 0.953838
Target:  5'- cCGugUCGG-CGUCGGaGGCGG-GGCg -3'
miRNA:   3'- uGCugAGCCuGCAGCUgCUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 2074 0.66 0.952663
Target:  5'- cGCGGCggCGGgguccgggggcccgGCGUCGGCGcgcagcACGAgCGGCg -3'
miRNA:   3'- -UGCUGa-GCC--------------UGCAGCUGC------UGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 55220 0.66 0.949843
Target:  5'- cGCGGCgcgCGcaGACGcCGACGcccACGGCGAg -3'
miRNA:   3'- -UGCUGa--GC--CUGCaGCUGC---UGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 118032 0.66 0.949843
Target:  5'- gGCGGCg-GGGC-UCGGCGGgGGCGGg -3'
miRNA:   3'- -UGCUGagCCUGcAGCUGCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 126042 0.66 0.949843
Target:  5'- gGCGACcccgUGGGCGggGGCGAUGugG-Ca -3'
miRNA:   3'- -UGCUGa---GCCUGCagCUGCUGCugCuG- -5'
31130 3' -55.3 NC_006560.1 + 22284 0.66 0.949843
Target:  5'- cCGACccCGGGCGgcgCGccgcACGcCGGCGACg -3'
miRNA:   3'- uGCUGa-GCCUGCa--GC----UGCuGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.