miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 51924 0.66 0.945624
Target:  5'- gGCGGCUCcucauGGGCGaCGAgGA-GGCGGCc -3'
miRNA:   3'- -UGCUGAG-----CCUGCaGCUgCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 14376 0.66 0.949843
Target:  5'- gGCGAggCGaGGCGg-GGCGACGACcGACc -3'
miRNA:   3'- -UGCUgaGC-CUGCagCUGCUGCUG-CUG- -5'
31130 3' -55.3 NC_006560.1 + 21306 0.66 0.957613
Target:  5'- cGCGAg-CGGGCG-CGGCGAUGcuaACGAg -3'
miRNA:   3'- -UGCUgaGCCUGCaGCUGCUGC---UGCUg -5'
31130 3' -55.3 NC_006560.1 + 34623 0.66 0.947339
Target:  5'- cGCGGCUCGGGgGcgCGgaggucgcaccggggACGcGCGGCGGCc -3'
miRNA:   3'- -UGCUGAGCCUgCa-GC---------------UGC-UGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 5491 0.66 0.936505
Target:  5'- cGCGGCgagggUCGGcgGCGgucgCGGCGAggguCGGCGGCg -3'
miRNA:   3'- -UGCUG-----AGCC--UGCa---GCUGCU----GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 23461 0.66 0.945624
Target:  5'- cGCGGCggaggagggGGACGcCGACGcCGcCGACg -3'
miRNA:   3'- -UGCUGag-------CCUGCaGCUGCuGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 116641 0.66 0.941179
Target:  5'- cGCGGCgcagcgCGcGAUGUCGuCGGCGGcCGAg -3'
miRNA:   3'- -UGCUGa-----GC-CUGCAGCuGCUGCU-GCUg -5'
31130 3' -55.3 NC_006560.1 + 2371 0.66 0.941179
Target:  5'- cACGGCgcggCGGuacuCGcgCGGCGGCaGCGGCa -3'
miRNA:   3'- -UGCUGa---GCCu---GCa-GCUGCUGcUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 19397 0.66 0.949432
Target:  5'- cGCGGCaCGGGCcgggcgaGUCGcCG-CGGCGGCg -3'
miRNA:   3'- -UGCUGaGCCUG-------CAGCuGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 89788 0.66 0.941179
Target:  5'- cACGAC-CGGGC-UCGGgGGC-ACGGCg -3'
miRNA:   3'- -UGCUGaGCCUGcAGCUgCUGcUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 22077 0.66 0.941179
Target:  5'- cACG-CggCGGcCGaCGACGACGcCGACg -3'
miRNA:   3'- -UGCuGa-GCCuGCaGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 1879 0.66 0.936505
Target:  5'- cGCGGg-CGGGgGUCG-CgGGCGGCGGCg -3'
miRNA:   3'- -UGCUgaGCCUgCAGCuG-CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 4011 0.66 0.936505
Target:  5'- cCGGCgaGGcCGggGGCGGCGGCGGCg -3'
miRNA:   3'- uGCUGagCCuGCagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 23387 0.66 0.939801
Target:  5'- uACGGCgccgCGGGCGUCGuCGcCGcgcagcgccgccugGCGGCc -3'
miRNA:   3'- -UGCUGa---GCCUGCAGCuGCuGC--------------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 109163 0.66 0.936025
Target:  5'- gGCGAuCUCGccgggccGGCgGUCG-CGugGGCGGCa -3'
miRNA:   3'- -UGCU-GAGC-------CUG-CAGCuGCugCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 22284 0.66 0.949843
Target:  5'- cCGACccCGGGCGgcgCGccgcACGcCGGCGACg -3'
miRNA:   3'- uGCUGa-GCCUGCa--GC----UGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55220 0.66 0.949843
Target:  5'- cGCGGCgcgCGcaGACGcCGACGcccACGGCGAg -3'
miRNA:   3'- -UGCUGa--GC--CUGCaGCUGC---UGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 131824 0.66 0.949432
Target:  5'- cGCaGCgCGGgcccgcguacgccGCGgCGGCGGCGGCGACg -3'
miRNA:   3'- -UGcUGaGCC-------------UGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 108027 0.66 0.945624
Target:  5'- cGCGACgCGGAgcacCGUCu-CGGCGuCGGCg -3'
miRNA:   3'- -UGCUGaGCCU----GCAGcuGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3426 0.66 0.941179
Target:  5'- gGCGGCgggcgCGGGCGcccgCGGgGGCGAgGAg -3'
miRNA:   3'- -UGCUGa----GCCUGCa---GCUgCUGCUgCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.