Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 1879 | 0.66 | 0.936505 |
Target: 5'- cGCGGg-CGGGgGUCG-CgGGCGGCGGCg -3' miRNA: 3'- -UGCUgaGCCUgCAGCuG-CUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 22284 | 0.66 | 0.949843 |
Target: 5'- cCGACccCGGGCGgcgCGccgcACGcCGGCGACg -3' miRNA: 3'- uGCUGa-GCCUGCa--GC----UGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 15033 | 0.66 | 0.953838 |
Target: 5'- uGCGGCgUCGGagacucGCGcCgGGgGGCGACGGCg -3' miRNA: 3'- -UGCUG-AGCC------UGCaG-CUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 19397 | 0.66 | 0.949432 |
Target: 5'- cGCGGCaCGGGCcgggcgaGUCGcCG-CGGCGGCg -3' miRNA: 3'- -UGCUGaGCCUG-------CAGCuGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 100631 | 0.66 | 0.953838 |
Target: 5'- aGCGGacgCGGugGUCcACGuuGAUGGCg -3' miRNA: 3'- -UGCUga-GCCugCAGcUGCugCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 11696 | 0.66 | 0.957613 |
Target: 5'- gGCGGgaUCGG-CGUCG-CGGgGACGAa -3' miRNA: 3'- -UGCUg-AGCCuGCAGCuGCUgCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 89788 | 0.66 | 0.941179 |
Target: 5'- cACGAC-CGGGC-UCGGgGGC-ACGGCg -3' miRNA: 3'- -UGCUGaGCCUGcAGCUgCUGcUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 31117 | 0.66 | 0.949843 |
Target: 5'- cCGGcCUCGGGCGcCGGgGGCGccucCGGCu -3' miRNA: 3'- uGCU-GAGCCUGCaGCUgCUGCu---GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 118032 | 0.66 | 0.949843 |
Target: 5'- gGCGGCg-GGGC-UCGGCGGgGGCGGg -3' miRNA: 3'- -UGCUGagCCUGcAGCUGCUgCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 124759 | 0.66 | 0.957613 |
Target: 5'- gACGAC-CGcGACGcCGAgGGgGGCGAg -3' miRNA: 3'- -UGCUGaGC-CUGCaGCUgCUgCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 12595 | 0.66 | 0.953838 |
Target: 5'- cACGuGCUUGG-CGgccgcgCGGCcGCGACGGCg -3' miRNA: 3'- -UGC-UGAGCCuGCa-----GCUGcUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 144358 | 0.66 | 0.957613 |
Target: 5'- gACGGCcgCGGGgcCG-CGGCGGCaggGGCGGCg -3' miRNA: 3'- -UGCUGa-GCCU--GCaGCUGCUG---CUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 147982 | 0.66 | 0.953838 |
Target: 5'- cCGugUCGG-CGUCGGaGGCGG-GGCg -3' miRNA: 3'- uGCugAGCCuGCAGCUgCUGCUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 32934 | 0.66 | 0.953838 |
Target: 5'- -gGGCagGGGgcCGUCGccgcCGGCGGCGACg -3' miRNA: 3'- ugCUGagCCU--GCAGCu---GCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 53907 | 0.66 | 0.957613 |
Target: 5'- aGCGACUCGGAggagccCGUCuACGAgGA-GAUc -3' miRNA: 3'- -UGCUGAGCCU------GCAGcUGCUgCUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 34623 | 0.66 | 0.947339 |
Target: 5'- cGCGGCUCGGGgGcgCGgaggucgcaccggggACGcGCGGCGGCc -3' miRNA: 3'- -UGCUGAGCCUgCa-GC---------------UGC-UGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 116641 | 0.66 | 0.941179 |
Target: 5'- cGCGGCgcagcgCGcGAUGUCGuCGGCGGcCGAg -3' miRNA: 3'- -UGCUGa-----GC-CUGCAGCuGCUGCU-GCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 21306 | 0.66 | 0.957613 |
Target: 5'- cGCGAg-CGGGCG-CGGCGAUGcuaACGAg -3' miRNA: 3'- -UGCUgaGCCUGCaGCUGCUGC---UGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 82598 | 0.67 | 0.920549 |
Target: 5'- cGCGGCUcgccccgaggcccCGGACGgCGGCugGGCGGCGGg -3' miRNA: 3'- -UGCUGA-------------GCCUGCaGCUG--CUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 130608 | 0.67 | 0.921099 |
Target: 5'- cGCGGC-CGGcCGcgCGGCuGGCGugGGCc -3' miRNA: 3'- -UGCUGaGCCuGCa-GCUG-CUGCugCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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