Results 41 - 60 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 9093 | 0.67 | 0.909674 |
Target: 5'- gGCGACggCGGAgCGcgCGcGCGGCGcGCGGCa -3' miRNA: 3'- -UGCUGa-GCCU-GCa-GC-UGCUGC-UGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 54622 | 0.67 | 0.903619 |
Target: 5'- cGCGAC-CGcGGCGagcugcUUGGCGACGGCGcGCg -3' miRNA: 3'- -UGCUGaGC-CUGC------AGCUGCUGCUGC-UG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 90726 | 0.67 | 0.915501 |
Target: 5'- cAUGAC-C-GAgGUCGACGACGcCGGCc -3' miRNA: 3'- -UGCUGaGcCUgCAGCUGCUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 82598 | 0.67 | 0.920549 |
Target: 5'- cGCGGCUcgccccgaggcccCGGACGgCGGCugGGCGGCGGg -3' miRNA: 3'- -UGCUGA-------------GCCUGCaGCUG--CUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 92902 | 0.67 | 0.926465 |
Target: 5'- cGCGGCggCGGcgaGUgGACGACcgaGGCGGCg -3' miRNA: 3'- -UGCUGa-GCCug-CAgCUGCUG---CUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 134524 | 0.67 | 0.903619 |
Target: 5'- gGCGGCguugCGGACG-CGGCaGACG-CGGg -3' miRNA: 3'- -UGCUGa---GCCUGCaGCUG-CUGCuGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 64918 | 0.67 | 0.915501 |
Target: 5'- aGCGGCaCGGggaACGUCGAgCGGgGACGGg -3' miRNA: 3'- -UGCUGaGCC---UGCAGCU-GCUgCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 125036 | 0.67 | 0.915501 |
Target: 5'- gGCGGCUgGuGGCG-CGGCGGuCGcCGGCg -3' miRNA: 3'- -UGCUGAgC-CUGCaGCUGCU-GCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 114364 | 0.67 | 0.926465 |
Target: 5'- cGCGuACgCGGGCGaCcGCGAgGGCGACg -3' miRNA: 3'- -UGC-UGaGCCUGCaGcUGCUgCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 130608 | 0.67 | 0.921099 |
Target: 5'- cGCGGC-CGGcCGcgCGGCuGGCGugGGCc -3' miRNA: 3'- -UGCUGaGCCuGCa-GCUG-CUGCugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3156 | 0.67 | 0.931601 |
Target: 5'- -gGGCUCggggaagagcgGGugGUcCGAgagcuCGGCGACGACg -3' miRNA: 3'- ugCUGAG-----------CCugCA-GCU-----GCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 133517 | 0.67 | 0.931601 |
Target: 5'- cCGGC-CGGG-GUCGGCGGCuucGugGGCg -3' miRNA: 3'- uGCUGaGCCUgCAGCUGCUG---CugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 107110 | 0.67 | 0.931601 |
Target: 5'- cGCGGCgUGGGCuaucggcugGUCGGCGuCGACGuCa -3' miRNA: 3'- -UGCUGaGCCUG---------CAGCUGCuGCUGCuG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 45576 | 0.67 | 0.931601 |
Target: 5'- cCGGC-CGGgaccuccacGCGcUUGugGACGACGAUg -3' miRNA: 3'- uGCUGaGCC---------UGC-AGCugCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 15768 | 0.67 | 0.930084 |
Target: 5'- gGCGACUcCGGGCccgggggccggcagGgccCGGCGcCGGCGGCg -3' miRNA: 3'- -UGCUGA-GCCUG--------------Ca--GCUGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 130414 | 0.67 | 0.931601 |
Target: 5'- gGCGGCccUGGAgCG-CGAgGugGGCGGCg -3' miRNA: 3'- -UGCUGa-GCCU-GCaGCUgCugCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 58906 | 0.67 | 0.903619 |
Target: 5'- cGCGGCgCGGAgcucCGUCGcgccCGACGcCGACu -3' miRNA: 3'- -UGCUGaGCCU----GCAGCu---GCUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 112370 | 0.67 | 0.931601 |
Target: 5'- uCGACUucuucgUGGGgGUCGcCGACGuCGACc -3' miRNA: 3'- uGCUGA------GCCUgCAGCuGCUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 114616 | 0.67 | 0.903619 |
Target: 5'- -gGGCUcugCGG-UGUCaACGGCGACGGCg -3' miRNA: 3'- ugCUGA---GCCuGCAGcUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 101761 | 0.67 | 0.915501 |
Target: 5'- gGCGGCcgcgucgCGGggcACGUCGcCGGgGGCGGCg -3' miRNA: 3'- -UGCUGa------GCC---UGCAGCuGCUgCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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