miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 119641 0.67 0.903619
Target:  5'- cGCGcGCaucgCGGAgGUCGACGcCGACG-Cg -3'
miRNA:   3'- -UGC-UGa---GCCUgCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 54622 0.67 0.903619
Target:  5'- cGCGAC-CGcGGCGagcugcUUGGCGACGGCGcGCg -3'
miRNA:   3'- -UGCUGaGC-CUGC------AGCUGCUGCUGC-UG- -5'
31130 3' -55.3 NC_006560.1 + 78742 0.67 0.903619
Target:  5'- -gGGCcccCGGACGugcgcuUCGugGGCGGCGAg -3'
miRNA:   3'- ugCUGa--GCCUGC------AGCugCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 80371 0.67 0.903619
Target:  5'- -gGACUCGGACGaauccUCgGugGACGccaaccccaACGACc -3'
miRNA:   3'- ugCUGAGCCUGC-----AG-CugCUGC---------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 114616 0.67 0.903619
Target:  5'- -gGGCUcugCGG-UGUCaACGGCGACGGCg -3'
miRNA:   3'- ugCUGA---GCCuGCAGcUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 134524 0.67 0.903619
Target:  5'- gGCGGCguugCGGACG-CGGCaGACG-CGGg -3'
miRNA:   3'- -UGCUGa---GCCUGCaGCUG-CUGCuGCUg -5'
31130 3' -55.3 NC_006560.1 + 125036 0.67 0.915501
Target:  5'- gGCGGCUgGuGGCG-CGGCGGuCGcCGGCg -3'
miRNA:   3'- -UGCUGAgC-CUGCaGCUGCU-GCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 101761 0.67 0.915501
Target:  5'- gGCGGCcgcgucgCGGggcACGUCGcCGGgGGCGGCg -3'
miRNA:   3'- -UGCUGa------GCC---UGCAGCuGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 64918 0.67 0.915501
Target:  5'- aGCGGCaCGGggaACGUCGAgCGGgGACGGg -3'
miRNA:   3'- -UGCUGaGCC---UGCAGCU-GCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 9093 0.67 0.909674
Target:  5'- gGCGACggCGGAgCGcgCGcGCGGCGcGCGGCa -3'
miRNA:   3'- -UGCUGa-GCCU-GCa-GC-UGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 58906 0.67 0.903619
Target:  5'- cGCGGCgCGGAgcucCGUCGcgccCGACGcCGACu -3'
miRNA:   3'- -UGCUGaGCCU----GCAGCu---GCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 74905 0.68 0.870016
Target:  5'- gGCGGCgCGGcCGUCG-CGACGGCc-- -3'
miRNA:   3'- -UGCUGaGCCuGCAGCuGCUGCUGcug -5'
31130 3' -55.3 NC_006560.1 + 2457 0.68 0.870016
Target:  5'- cGCGGCcCaGGCG-CGGCGGCGGCG-Cg -3'
miRNA:   3'- -UGCUGaGcCUGCaGCUGCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 52269 0.68 0.870016
Target:  5'- cCGAUgCGGGCG-CGGCGuCGACGcGCa -3'
miRNA:   3'- uGCUGaGCCUGCaGCUGCuGCUGC-UG- -5'
31130 3' -55.3 NC_006560.1 + 66056 0.68 0.875045
Target:  5'- uGCGAUUCGGggGCGggggggccauguccUCGACGcCGugGAUg -3'
miRNA:   3'- -UGCUGAGCC--UGC--------------AGCUGCuGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 45905 0.68 0.877168
Target:  5'- gGCGACcggCGGGucucccCGggggCGAgGACGACGGCc -3'
miRNA:   3'- -UGCUGa--GCCU------GCa---GCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 95306 0.68 0.890833
Target:  5'- gACGGC-CGcGGCGggGACGGuCGugGACa -3'
miRNA:   3'- -UGCUGaGC-CUGCagCUGCU-GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 75339 0.68 0.890833
Target:  5'- -gGGCaaGGugGUCGggGCGACGcgGCGGCg -3'
miRNA:   3'- ugCUGagCCugCAGC--UGCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 18180 0.68 0.897337
Target:  5'- aGCGACaUGGGCGUUGuuguggucACGGUGAUGACg -3'
miRNA:   3'- -UGCUGaGCCUGCAGC--------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 84391 0.68 0.897337
Target:  5'- cCGGCUCGccCG-CGACGACGGCaggGGCg -3'
miRNA:   3'- uGCUGAGCcuGCaGCUGCUGCUG---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.