miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 53480 0.68 0.884108
Target:  5'- -aGGC-CGcGGCGgcgcgCGAgGACGACGACc -3'
miRNA:   3'- ugCUGaGC-CUGCa----GCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 73670 0.68 0.884108
Target:  5'- -gGACgCGGugGcgCGGCG-CGGCGGCc -3'
miRNA:   3'- ugCUGaGCCugCa-GCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 65384 0.68 0.86929
Target:  5'- cGCGgaACUCGGACauggcggGUCGAgGGCGcuuCGGCg -3'
miRNA:   3'- -UGC--UGAGCCUG-------CAGCUgCUGCu--GCUG- -5'
31130 3' -55.3 NC_006560.1 + 84391 0.68 0.897337
Target:  5'- cCGGCUCGccCG-CGACGACGGCaggGGCg -3'
miRNA:   3'- uGCUGAGCcuGCaGCUGCUGCUG---CUG- -5'
31130 3' -55.3 NC_006560.1 + 149325 0.68 0.897337
Target:  5'- aACGGCg-GGcCGgaGACGGCGGCGGCu -3'
miRNA:   3'- -UGCUGagCCuGCagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 131162 0.68 0.897337
Target:  5'- cGCGGCUCuGGGCGgCGGCcgccGCGGgGGCg -3'
miRNA:   3'- -UGCUGAG-CCUGCaGCUGc---UGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 18180 0.68 0.897337
Target:  5'- aGCGACaUGGGCGUUGuuguggucACGGUGAUGACg -3'
miRNA:   3'- -UGCUGaGCCUGCAGC--------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 101317 0.68 0.890833
Target:  5'- cACGACgcgccgcgCGGGCG-CGACGGCG-CGuCc -3'
miRNA:   3'- -UGCUGa-------GCCUGCaGCUGCUGCuGCuG- -5'
31130 3' -55.3 NC_006560.1 + 95306 0.68 0.890833
Target:  5'- gACGGC-CGcGGCGggGACGGuCGugGACa -3'
miRNA:   3'- -UGCUGaGC-CUGCagCUGCU-GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 75339 0.68 0.890833
Target:  5'- -gGGCaaGGugGUCGggGCGACGcgGCGGCg -3'
miRNA:   3'- ugCUGagCCugCAGC--UGCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 142963 0.68 0.884108
Target:  5'- gGCGACgcgCGGGcCGcCG-CGGCGAgCGACc -3'
miRNA:   3'- -UGCUGa--GCCU-GCaGCuGCUGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 99610 0.68 0.884108
Target:  5'- cGCGGCgggGGGCGgcuggCGguccGCGGCGAUGGCg -3'
miRNA:   3'- -UGCUGag-CCUGCa----GC----UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2014 0.69 0.862658
Target:  5'- gGCGucCUCGG-CGUCGGCGagcaGCGuguCGGCg -3'
miRNA:   3'- -UGCu-GAGCCuGCAGCUGC----UGCu--GCUG- -5'
31130 3' -55.3 NC_006560.1 + 99929 0.69 0.862658
Target:  5'- gGCG-CUCGGGCG-CGGCGGacggGAgGGCg -3'
miRNA:   3'- -UGCuGAGCCUGCaGCUGCUg---CUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 10071 0.69 0.862658
Target:  5'- cAUGACguaGGGgucguCGUCGugGGCGAgCGGCa -3'
miRNA:   3'- -UGCUGag-CCU-----GCAGCugCUGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 3601 0.69 0.855099
Target:  5'- aGCGGCgCGGcgGCGcCGGCGACGA-GGCc -3'
miRNA:   3'- -UGCUGaGCC--UGCaGCUGCUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 88677 0.69 0.855099
Target:  5'- uGCGGCgCGGGCugcgcgccgCGGcCGGCGGCGGCa -3'
miRNA:   3'- -UGCUGaGCCUGca-------GCU-GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3238 0.69 0.855099
Target:  5'- gGCGGCgugUGGGCGggcccgGGCGGCGcGCGGCg -3'
miRNA:   3'- -UGCUGa--GCCUGCag----CUGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 149919 0.69 0.847344
Target:  5'- gGCGGC-CGGGCG-CGGCGuCGGUGGCc -3'
miRNA:   3'- -UGCUGaGCCUGCaGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 82751 0.69 0.847344
Target:  5'- gACGGCggacgaGGACGUCGAgGuCGGgGGCc -3'
miRNA:   3'- -UGCUGag----CCUGCAGCUgCuGCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.