miRNA display CGI


Results 101 - 120 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 5109 0.69 0.822975
Target:  5'- uCGGCggGGGCG-CGGCGuCGAUGACc -3'
miRNA:   3'- uGCUGagCCUGCaGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 71633 0.69 0.839401
Target:  5'- gACGGCUgccUGGugGagGGCGggGCGugGACg -3'
miRNA:   3'- -UGCUGA---GCCugCagCUGC--UGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 83442 0.69 0.839401
Target:  5'- -aGGgUCGG-CG-CGGCGGCGGCGAg -3'
miRNA:   3'- ugCUgAGCCuGCaGCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 40861 0.69 0.847344
Target:  5'- cACGACcCGGAgcccCGagccgGGCGGCGGCGACa -3'
miRNA:   3'- -UGCUGaGCCU----GCag---CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 82751 0.69 0.847344
Target:  5'- gACGGCggacgaGGACGUCGAgGuCGGgGGCc -3'
miRNA:   3'- -UGCUGag----CCUGCAGCUgCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 149919 0.69 0.847344
Target:  5'- gGCGGC-CGGGCG-CGGCGuCGGUGGCc -3'
miRNA:   3'- -UGCUGaGCCUGCaGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3238 0.69 0.855099
Target:  5'- gGCGGCgugUGGGCGggcccgGGCGGCGcGCGGCg -3'
miRNA:   3'- -UGCUGa--GCCUGCag----CUGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 88677 0.69 0.855099
Target:  5'- uGCGGCgCGGGCugcgcgccgCGGcCGGCGGCGGCa -3'
miRNA:   3'- -UGCUGaGCCUGca-------GCU-GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3601 0.69 0.855099
Target:  5'- aGCGGCgCGGcgGCGcCGGCGACGA-GGCc -3'
miRNA:   3'- -UGCUGaGCC--UGCaGCUGCUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 60750 0.69 0.839401
Target:  5'- cCGACagCuGGCGgggGACGACGGCGACu -3'
miRNA:   3'- uGCUGa-GcCUGCag-CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 63471 0.69 0.839401
Target:  5'- cCG-CUCugcuGGGCGUUGGCGGgGugGACg -3'
miRNA:   3'- uGCuGAG----CCUGCAGCUGCUgCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 2014 0.69 0.862658
Target:  5'- gGCGucCUCGG-CGUCGGCGagcaGCGuguCGGCg -3'
miRNA:   3'- -UGCu-GAGCCuGCAGCUGC----UGCu--GCUG- -5'
31130 3' -55.3 NC_006560.1 + 99929 0.69 0.862658
Target:  5'- gGCG-CUCGGGCG-CGGCGGacggGAgGGCg -3'
miRNA:   3'- -UGCuGAGCCUGCaGCUGCUg---CUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 10071 0.69 0.862658
Target:  5'- cAUGACguaGGGgucguCGUCGugGGCGAgCGGCa -3'
miRNA:   3'- -UGCUGag-CCU-----GCAGCugCUGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 85569 0.7 0.814506
Target:  5'- gGCGGCUCGGggGCGgggggcgCGGCGgGCG-CGGCg -3'
miRNA:   3'- -UGCUGAGCC--UGCa------GCUGC-UGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55468 0.7 0.814506
Target:  5'- -gGGCagGGccCGcCGGCGACGACGGCg -3'
miRNA:   3'- ugCUGagCCu-GCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 51619 0.7 0.814506
Target:  5'- uCGACggCGGGCG-CGGCGAgcccgcCGugGGCg -3'
miRNA:   3'- uGCUGa-GCCUGCaGCUGCU------GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 124245 0.7 0.805878
Target:  5'- cCGACgcccCGGACGUCGAgcCGugGugGuCc -3'
miRNA:   3'- uGCUGa---GCCUGCAGCU--GCugCugCuG- -5'
31130 3' -55.3 NC_006560.1 + 75439 0.7 0.779111
Target:  5'- cGCGAgCgcugggucgCGGACGUCGACG-CGGCG-Cu -3'
miRNA:   3'- -UGCU-Ga--------GCCUGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 11127 0.7 0.779111
Target:  5'- -gGGCUcagCGGGCGUCGAgGGCcccggGGCGGCg -3'
miRNA:   3'- ugCUGA---GCCUGCAGCUgCUG-----CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.