Results 81 - 100 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 82751 | 0.69 | 0.847344 |
Target: 5'- gACGGCggacgaGGACGUCGAgGuCGGgGGCc -3' miRNA: 3'- -UGCUGag----CCUGCAGCUgCuGCUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 149919 | 0.69 | 0.847344 |
Target: 5'- gGCGGC-CGGGCG-CGGCGuCGGUGGCc -3' miRNA: 3'- -UGCUGaGCCUGCaGCUGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3238 | 0.69 | 0.855099 |
Target: 5'- gGCGGCgugUGGGCGggcccgGGCGGCGcGCGGCg -3' miRNA: 3'- -UGCUGa--GCCUGCag----CUGCUGC-UGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 88677 | 0.69 | 0.855099 |
Target: 5'- uGCGGCgCGGGCugcgcgccgCGGcCGGCGGCGGCa -3' miRNA: 3'- -UGCUGaGCCUGca-------GCU-GCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3601 | 0.69 | 0.855099 |
Target: 5'- aGCGGCgCGGcgGCGcCGGCGACGA-GGCc -3' miRNA: 3'- -UGCUGaGCC--UGCaGCUGCUGCUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 10071 | 0.69 | 0.862658 |
Target: 5'- cAUGACguaGGGgucguCGUCGugGGCGAgCGGCa -3' miRNA: 3'- -UGCUGag-CCU-----GCAGCugCUGCU-GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 99929 | 0.69 | 0.862658 |
Target: 5'- gGCG-CUCGGGCG-CGGCGGacggGAgGGCg -3' miRNA: 3'- -UGCuGAGCCUGCaGCUGCUg---CUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 2014 | 0.69 | 0.862658 |
Target: 5'- gGCGucCUCGG-CGUCGGCGagcaGCGuguCGGCg -3' miRNA: 3'- -UGCu-GAGCCuGCAGCUGC----UGCu--GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 63471 | 0.69 | 0.839401 |
Target: 5'- cCG-CUCugcuGGGCGUUGGCGGgGugGACg -3' miRNA: 3'- uGCuGAG----CCUGCAGCUGCUgCugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 60750 | 0.69 | 0.839401 |
Target: 5'- cCGACagCuGGCGgggGACGACGGCGACu -3' miRNA: 3'- uGCUGa-GcCUGCag-CUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 83442 | 0.69 | 0.839401 |
Target: 5'- -aGGgUCGG-CG-CGGCGGCGGCGAg -3' miRNA: 3'- ugCUgAGCCuGCaGCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 49348 | 0.69 | 0.822975 |
Target: 5'- gACGACUUugaccuGACGcugcUCGGgGACGACGACc -3' miRNA: 3'- -UGCUGAGc-----CUGC----AGCUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 50056 | 0.69 | 0.822975 |
Target: 5'- gACGACgucaUGGACuaCGACaGCGACGACg -3' miRNA: 3'- -UGCUGa---GCCUGcaGCUGcUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 57136 | 0.69 | 0.822975 |
Target: 5'- cACGACcgCgGGGCGUCGGCGcCGACc-- -3' miRNA: 3'- -UGCUGa-G-CCUGCAGCUGCuGCUGcug -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 62939 | 0.69 | 0.822975 |
Target: 5'- cGCGAacccCUCGcuGACGUCGGCGAgcugcgccgaGGCGACg -3' miRNA: 3'- -UGCU----GAGC--CUGCAGCUGCUg---------CUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 4672 | 0.69 | 0.831275 |
Target: 5'- aGCGGCcCGuGGCGUCGcgcccggccACGGCGGCGcGCg -3' miRNA: 3'- -UGCUGaGC-CUGCAGC---------UGCUGCUGC-UG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 81214 | 0.69 | 0.831275 |
Target: 5'- gGCGAC-CGGGagGagGACGGCGGCGGa -3' miRNA: 3'- -UGCUGaGCCUg-CagCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 52536 | 0.69 | 0.839401 |
Target: 5'- -aGGCggGGGCGUCGA--GCGGCGGCc -3' miRNA: 3'- ugCUGagCCUGCAGCUgcUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 71633 | 0.69 | 0.839401 |
Target: 5'- gACGGCUgccUGGugGagGGCGggGCGugGACg -3' miRNA: 3'- -UGCUGA---GCCugCagCUGC--UGCugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 103113 | 0.69 | 0.862658 |
Target: 5'- cCGGCggCGGACG-CGGgGGCGGCG-Cg -3' miRNA: 3'- uGCUGa-GCCUGCaGCUgCUGCUGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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