miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 101691 0.75 0.533272
Target:  5'- cGCGGCUCaGGAa---GGCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAG-CCUgcagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3199 0.75 0.533272
Target:  5'- cGCGGCUCGcaguaGGCcUCGAgGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAGC-----CUGcAGCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2292 0.75 0.533272
Target:  5'- cGCGGCggaagUCGGGCG-CGcCGGCGGCGGCc -3'
miRNA:   3'- -UGCUG-----AGCCUGCaGCuGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 50196 0.75 0.543033
Target:  5'- cACGGCccCGGACGcCcccgGGCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCUGCaG----CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 5261 0.75 0.543033
Target:  5'- cGCGA---GGACG-CGGCGGCGGCGGCg -3'
miRNA:   3'- -UGCUgagCCUGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 4150 0.75 0.552852
Target:  5'- gGCGGCUCauGGCcaCGGCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAGc-CUGcaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 30186 0.75 0.552852
Target:  5'- aGCGACgacaGCGaCGACGGCGACGACg -3'
miRNA:   3'- -UGCUGagccUGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2681 0.74 0.562723
Target:  5'- gGCGGCaCGG-CGUCcACGACGACGAg -3'
miRNA:   3'- -UGCUGaGCCuGCAGcUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 3630 0.74 0.602616
Target:  5'- cACGGCgCGcACGgCGGCGACGGCGGCc -3'
miRNA:   3'- -UGCUGaGCcUGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 102687 0.73 0.612659
Target:  5'- gAUGaaGCUCcuGGCGUCGGCGACGAUGAa -3'
miRNA:   3'- -UGC--UGAGc-CUGCAGCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 142357 0.73 0.622715
Target:  5'- cGCGcCUCGGGgGcCGGgGGCGGCGGCc -3'
miRNA:   3'- -UGCuGAGCCUgCaGCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 139552 0.73 0.622715
Target:  5'- gGCGGaa-GGGCGUgGugGGCGACGAg -3'
miRNA:   3'- -UGCUgagCCUGCAgCugCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 73334 0.73 0.622715
Target:  5'- -gGGCUCGGGCGUCGGCcgccuGGCGcUGGCc -3'
miRNA:   3'- ugCUGAGCCUGCAGCUG-----CUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 57181 0.73 0.632779
Target:  5'- cCGaACUCGGAgGcgagcgCGGCGGCGACGAg -3'
miRNA:   3'- uGC-UGAGCCUgCa-----GCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 50401 0.73 0.632779
Target:  5'- gGCGACUaccCGGGCG-CGGCGGgGGCGGa -3'
miRNA:   3'- -UGCUGA---GCCUGCaGCUGCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 20933 0.73 0.662937
Target:  5'- -gGGC-CGG-CGgCGGCGGCGACGGCg -3'
miRNA:   3'- ugCUGaGCCuGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55260 0.73 0.662937
Target:  5'- cGCGGCcgCGGACcccgCGGCGACGcCGGCc -3'
miRNA:   3'- -UGCUGa-GCCUGca--GCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 71896 0.72 0.672952
Target:  5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3'
miRNA:   3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 14254 0.72 0.672952
Target:  5'- cGCGGCggUGGAUGUCGcguugGCGcCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCUGCAGC-----UGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 5167 0.72 0.682934
Target:  5'- gGCcGCggGGGCGggccgCGGCGACGGCGGCc -3'
miRNA:   3'- -UGcUGagCCUGCa----GCUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.