miRNA display CGI


Results 41 - 60 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 5167 0.72 0.682934
Target:  5'- gGCcGCggGGGCGggccgCGGCGACGGCGGCc -3'
miRNA:   3'- -UGcUGagCCUGCa----GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3939 0.72 0.682934
Target:  5'- gGCGGCgccgCGGuCGgCGGCGAgGGCGGCc -3'
miRNA:   3'- -UGCUGa---GCCuGCaGCUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 5288 0.72 0.691885
Target:  5'- uCGGCgUCGGcguCGUCGucggccgccgcguGCGACGGCGGCg -3'
miRNA:   3'- uGCUG-AGCCu--GCAGC-------------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 117895 0.72 0.691885
Target:  5'- gGCGAgCUCGuGGCGcCGACGAcgcgcuacgccgcCGACGGCc -3'
miRNA:   3'- -UGCU-GAGC-CUGCaGCUGCU-------------GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3526 0.72 0.692877
Target:  5'- -aGGCUCuGGuuccggaagagcAgGUCGGCGGCGGCGGCg -3'
miRNA:   3'- ugCUGAG-CC------------UgCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 10546 0.72 0.70277
Target:  5'- cCGACgcacUGGGCGUCGACGACGGu--- -3'
miRNA:   3'- uGCUGa---GCCUGCAGCUGCUGCUgcug -5'
31130 3' -55.3 NC_006560.1 + 141575 0.72 0.70277
Target:  5'- cCGGCUC-GACccCGGCGGCGGCGGCc -3'
miRNA:   3'- uGCUGAGcCUGcaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 43419 0.72 0.70277
Target:  5'- cGCGGCgccggGGGCGUCGGCG-CG-CGGCa -3'
miRNA:   3'- -UGCUGag---CCUGCAGCUGCuGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 4044 0.72 0.712606
Target:  5'- gGCGGCggCGcGGCGcCGGCcGCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GC-CUGCaGCUGcUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 12005 0.72 0.712606
Target:  5'- aGCGGCacaGGGCGaaggCGACGGCGugGCGGCg -3'
miRNA:   3'- -UGCUGag-CCUGCa---GCUGCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2578 0.71 0.722375
Target:  5'- cGCGGCgggccagCGGACGUCGcacugcGCGGCGggcagcACGGCg -3'
miRNA:   3'- -UGCUGa------GCCUGCAGC------UGCUGC------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 75113 0.71 0.731104
Target:  5'- cGCGGCUCGGggcccugggggccGCGgccgcCGACcuGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAGCC-------------UGCa----GCUG--CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 150033 0.71 0.73207
Target:  5'- cCGACggCGGGCGagGACGACcuccGCGGCg -3'
miRNA:   3'- uGCUGa-GCCUGCagCUGCUGc---UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 103982 0.71 0.741681
Target:  5'- gGCGAgauCUCGGuCGccgaGGCGGCGAUGGCa -3'
miRNA:   3'- -UGCU---GAGCCuGCag--CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 99876 0.71 0.751199
Target:  5'- -gGGCgCGGGgGUCGugG-CGGCGGCg -3'
miRNA:   3'- ugCUGaGCCUgCAGCugCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 39618 0.71 0.759679
Target:  5'- aGCGcCgcggCGGGCGUCGGCGuccgggcGCGGCGGa -3'
miRNA:   3'- -UGCuGa---GCCUGCAGCUGC-------UGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 102408 0.71 0.760616
Target:  5'- gGCGGcCUCGGGCG-CGGCcGCGGCGuCc -3'
miRNA:   3'- -UGCU-GAGCCUGCaGCUGcUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 72182 0.71 0.769923
Target:  5'- aGCGACgcgcCGuGGCGUCccacccgcugcGCGGCGACGACg -3'
miRNA:   3'- -UGCUGa---GC-CUGCAGc----------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 83912 0.71 0.769923
Target:  5'- uCGACUgcaucgcgcCGGugGUCGAcCGAaUGGCGGCg -3'
miRNA:   3'- uGCUGA---------GCCugCAGCU-GCU-GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 130295 0.71 0.769923
Target:  5'- gGCGAgauCUCGGcCGcCGGCGcggugGCGGCGGCg -3'
miRNA:   3'- -UGCU---GAGCCuGCaGCUGC-----UGCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.