miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 77585 0.71 0.773613
Target:  5'- cGCGACUCGGugGcCGcggccgccgagcuguACGccgcccuggucGCGACGACc -3'
miRNA:   3'- -UGCUGAGCCugCaGC---------------UGC-----------UGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 41441 0.7 0.779111
Target:  5'- gGCGuGCUCGGgaaaguGCGUCuccaGACaGGCGACGACc -3'
miRNA:   3'- -UGC-UGAGCC------UGCAG----CUG-CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 135051 0.7 0.779111
Target:  5'- cACGcGCUCGGccaccgcggcgACGUCGGCGuCGGgGGCg -3'
miRNA:   3'- -UGC-UGAGCC-----------UGCAGCUGCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 94077 0.7 0.779111
Target:  5'- uCGGCUgGaGACGUaCGGCGgggGCGugGACa -3'
miRNA:   3'- uGCUGAgC-CUGCA-GCUGC---UGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 75439 0.7 0.779111
Target:  5'- cGCGAgCgcugggucgCGGACGUCGACG-CGGCG-Cu -3'
miRNA:   3'- -UGCU-Ga--------GCCUGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 11127 0.7 0.779111
Target:  5'- -gGGCUcagCGGGCGUCGAgGGCcccggGGCGGCg -3'
miRNA:   3'- ugCUGA---GCCUGCAGCUgCUG-----CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 148507 0.7 0.788172
Target:  5'- cCGGCg-GGACGgCGGucCGACGGCGACu -3'
miRNA:   3'- uGCUGagCCUGCaGCU--GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 17692 0.7 0.797097
Target:  5'- -gGGCcCGGGgggGUCGugGGCGGCGGCc -3'
miRNA:   3'- ugCUGaGCCUg--CAGCugCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 8650 0.7 0.797097
Target:  5'- cGCGACgaagccggCGGcccGCGuUCGcCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGa-------GCC---UGC-AGCuGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 118131 0.7 0.797097
Target:  5'- cGCGGCgccgggggCGGACG-CGGCGgaccGCGAgGACg -3'
miRNA:   3'- -UGCUGa-------GCCUGCaGCUGC----UGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 126662 0.7 0.797097
Target:  5'- gACGACgccggCGGcCG-CGAUGGCGcCGACg -3'
miRNA:   3'- -UGCUGa----GCCuGCaGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 140343 0.7 0.804133
Target:  5'- cCGGCgggacagccccgCGGGCGUCGGCG-CGGCG-Cg -3'
miRNA:   3'- uGCUGa-----------GCCUGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 124245 0.7 0.805878
Target:  5'- cCGACgcccCGGACGUCGAgcCGugGugGuCc -3'
miRNA:   3'- uGCUGa---GCCUGCAGCU--GCugCugCuG- -5'
31130 3' -55.3 NC_006560.1 + 92977 0.7 0.805878
Target:  5'- gGCGGCgCGGACGUCGGgGA-GGCGu- -3'
miRNA:   3'- -UGCUGaGCCUGCAGCUgCUgCUGCug -5'
31130 3' -55.3 NC_006560.1 + 9952 0.7 0.805878
Target:  5'- cGCGcACg-GGGCGUCGGCGgGCGAgCGGCc -3'
miRNA:   3'- -UGC-UGagCCUGCAGCUGC-UGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 51619 0.7 0.814506
Target:  5'- uCGACggCGGGCG-CGGCGAgcccgcCGugGGCg -3'
miRNA:   3'- uGCUGa-GCCUGCaGCUGCU------GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 54950 0.7 0.814506
Target:  5'- -gGGCUCGcGCGcCGGCGGCGggggagGCGACg -3'
miRNA:   3'- ugCUGAGCcUGCaGCUGCUGC------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55468 0.7 0.814506
Target:  5'- -gGGCagGGccCGcCGGCGACGACGGCg -3'
miRNA:   3'- ugCUGagCCu-GCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 85569 0.7 0.814506
Target:  5'- gGCGGCUCGGggGCGgggggcgCGGCGgGCG-CGGCg -3'
miRNA:   3'- -UGCUGAGCC--UGCa------GCUGC-UGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 49348 0.69 0.822975
Target:  5'- gACGACUUugaccuGACGcugcUCGGgGACGACGACc -3'
miRNA:   3'- -UGCUGAGc-----CUGC----AGCUgCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.