miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 130414 0.67 0.931601
Target:  5'- gGCGGCccUGGAgCG-CGAgGugGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCU-GCaGCUgCugCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 45576 0.67 0.931601
Target:  5'- cCGGC-CGGgaccuccacGCGcUUGugGACGACGAUg -3'
miRNA:   3'- uGCUGaGCC---------UGC-AGCugCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 133517 0.67 0.931601
Target:  5'- cCGGC-CGGG-GUCGGCGGCuucGugGGCg -3'
miRNA:   3'- uGCUGaGCCUgCAGCUGCUG---CugCUG- -5'
31130 3' -55.3 NC_006560.1 + 107110 0.67 0.931601
Target:  5'- cGCGGCgUGGGCuaucggcugGUCGGCGuCGACGuCa -3'
miRNA:   3'- -UGCUGaGCCUG---------CAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 18230 0.67 0.931601
Target:  5'- cGCGGCccugcccCGGACGUCGGCG--GACGcCa -3'
miRNA:   3'- -UGCUGa------GCCUGCAGCUGCugCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 112370 0.67 0.931601
Target:  5'- uCGACUucuucgUGGGgGUCGcCGACGuCGACc -3'
miRNA:   3'- uGCUGA------GCCUgCAGCuGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 15768 0.67 0.930084
Target:  5'- gGCGACUcCGGGCccgggggccggcagGgccCGGCGcCGGCGGCg -3'
miRNA:   3'- -UGCUGA-GCCUG--------------Ca--GCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 132894 0.67 0.926465
Target:  5'- cGCGGuCgaaGGGCGacgugCGGCGGcCGACGGCg -3'
miRNA:   3'- -UGCU-Gag-CCUGCa----GCUGCU-GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 114364 0.67 0.926465
Target:  5'- cGCGuACgCGGGCGaCcGCGAgGGCGACg -3'
miRNA:   3'- -UGC-UGaGCCUGCaGcUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 92902 0.67 0.926465
Target:  5'- cGCGGCggCGGcgaGUgGACGACcgaGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCug-CAgCUGCUG---CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 39965 0.67 0.926465
Target:  5'- gGCGGCgCGGGCGgcugCGugugcucgccGCGAcucCGGCGACa -3'
miRNA:   3'- -UGCUGaGCCUGCa---GC----------UGCU---GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 46506 0.67 0.926465
Target:  5'- cGCGugUCGu-CGUCGGCgGGCGGaGGCg -3'
miRNA:   3'- -UGCugAGCcuGCAGCUG-CUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 59497 0.67 0.926465
Target:  5'- gACGGCgguGugGcCGGUGACGACGACu -3'
miRNA:   3'- -UGCUGagcCugCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 118058 0.67 0.921646
Target:  5'- cCGGCgccgccgCGGGCGcccccgccgagcucgCGGCgGGCGACGACg -3'
miRNA:   3'- uGCUGa------GCCUGCa--------------GCUG-CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 130608 0.67 0.921099
Target:  5'- cGCGGC-CGGcCGcgCGGCuGGCGugGGCc -3'
miRNA:   3'- -UGCUGaGCCuGCa-GCUG-CUGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 82598 0.67 0.920549
Target:  5'- cGCGGCUcgccccgaggcccCGGACGgCGGCugGGCGGCGGg -3'
miRNA:   3'- -UGCUGA-------------GCCUGCaGCUG--CUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 64918 0.67 0.915501
Target:  5'- aGCGGCaCGGggaACGUCGAgCGGgGACGGg -3'
miRNA:   3'- -UGCUGaGCC---UGCAGCU-GCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 101761 0.67 0.915501
Target:  5'- gGCGGCcgcgucgCGGggcACGUCGcCGGgGGCGGCg -3'
miRNA:   3'- -UGCUGa------GCC---UGCAGCuGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 125036 0.67 0.915501
Target:  5'- gGCGGCUgGuGGCG-CGGCGGuCGcCGGCg -3'
miRNA:   3'- -UGCUGAgC-CUGCaGCUGCU-GCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 90726 0.67 0.915501
Target:  5'- cAUGAC-C-GAgGUCGACGACGcCGGCc -3'
miRNA:   3'- -UGCUGaGcCUgCAGCUGCUGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.