miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 21261 0.67 0.909674
Target:  5'- -aGGCgCGG-UGagGGCGGCGGCGGCg -3'
miRNA:   3'- ugCUGaGCCuGCagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 9093 0.67 0.909674
Target:  5'- gGCGACggCGGAgCGcgCGcGCGGCGcGCGGCa -3'
miRNA:   3'- -UGCUGa-GCCU-GCa-GC-UGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 80371 0.67 0.903619
Target:  5'- -gGACUCGGACGaauccUCgGugGACGccaaccccaACGACc -3'
miRNA:   3'- ugCUGAGCCUGC-----AG-CugCUGC---------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 117973 0.67 0.903619
Target:  5'- uACGugUggcgccUGGGCG-CGGCGGCGcccGCGGCg -3'
miRNA:   3'- -UGCugA------GCCUGCaGCUGCUGC---UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 119641 0.67 0.903619
Target:  5'- cGCGcGCaucgCGGAgGUCGACGcCGACG-Cg -3'
miRNA:   3'- -UGC-UGa---GCCUgCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 114616 0.67 0.903619
Target:  5'- -gGGCUcugCGG-UGUCaACGGCGACGGCg -3'
miRNA:   3'- ugCUGA---GCCuGCAGcUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 134524 0.67 0.903619
Target:  5'- gGCGGCguugCGGACG-CGGCaGACG-CGGg -3'
miRNA:   3'- -UGCUGa---GCCUGCaGCUG-CUGCuGCUg -5'
31130 3' -55.3 NC_006560.1 + 54622 0.67 0.903619
Target:  5'- cGCGAC-CGcGGCGagcugcUUGGCGACGGCGcGCg -3'
miRNA:   3'- -UGCUGaGC-CUGC------AGCUGCUGCUGC-UG- -5'
31130 3' -55.3 NC_006560.1 + 78742 0.67 0.903619
Target:  5'- -gGGCcccCGGACGugcgcuUCGugGGCGGCGAg -3'
miRNA:   3'- ugCUGa--GCCUGC------AGCugCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 58906 0.67 0.903619
Target:  5'- cGCGGCgCGGAgcucCGUCGcgccCGACGcCGACu -3'
miRNA:   3'- -UGCUGaGCCU----GCAGCu---GCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 146408 0.67 0.903001
Target:  5'- aGCGGCgggCGGagGCGgagCGGCGGagccccgaggagcCGACGACg -3'
miRNA:   3'- -UGCUGa--GCC--UGCa--GCUGCU-------------GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 18180 0.68 0.897337
Target:  5'- aGCGACaUGGGCGUUGuuguggucACGGUGAUGACg -3'
miRNA:   3'- -UGCUGaGCCUGCAGC--------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 84391 0.68 0.897337
Target:  5'- cCGGCUCGccCG-CGACGACGGCaggGGCg -3'
miRNA:   3'- uGCUGAGCcuGCaGCUGCUGCUG---CUG- -5'
31130 3' -55.3 NC_006560.1 + 149325 0.68 0.897337
Target:  5'- aACGGCg-GGcCGgaGACGGCGGCGGCu -3'
miRNA:   3'- -UGCUGagCCuGCagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 131162 0.68 0.897337
Target:  5'- cGCGGCUCuGGGCGgCGGCcgccGCGGgGGCg -3'
miRNA:   3'- -UGCUGAG-CCUGCaGCUGc---UGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 75339 0.68 0.890833
Target:  5'- -gGGCaaGGugGUCGggGCGACGcgGCGGCg -3'
miRNA:   3'- ugCUGagCCugCAGC--UGCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 95306 0.68 0.890833
Target:  5'- gACGGC-CGcGGCGggGACGGuCGugGACa -3'
miRNA:   3'- -UGCUGaGC-CUGCagCUGCU-GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 101317 0.68 0.890833
Target:  5'- cACGACgcgccgcgCGGGCG-CGACGGCG-CGuCc -3'
miRNA:   3'- -UGCUGa-------GCCUGCaGCUGCUGCuGCuG- -5'
31130 3' -55.3 NC_006560.1 + 142963 0.68 0.884108
Target:  5'- gGCGACgcgCGGGcCGcCG-CGGCGAgCGACc -3'
miRNA:   3'- -UGCUGa--GCCU-GCaGCuGCUGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 99610 0.68 0.884108
Target:  5'- cGCGGCgggGGGCGgcuggCGguccGCGGCGAUGGCg -3'
miRNA:   3'- -UGCUGag-CCUGCa----GC----UGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.