Results 81 - 100 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 73670 | 0.68 | 0.884108 |
Target: 5'- -gGACgCGGugGcgCGGCG-CGGCGGCc -3' miRNA: 3'- ugCUGaGCCugCa-GCUGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 99610 | 0.68 | 0.884108 |
Target: 5'- cGCGGCgggGGGCGgcuggCGguccGCGGCGAUGGCg -3' miRNA: 3'- -UGCUGag-CCUGCa----GC----UGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 142963 | 0.68 | 0.884108 |
Target: 5'- gGCGACgcgCGGGcCGcCG-CGGCGAgCGACc -3' miRNA: 3'- -UGCUGa--GCCU-GCaGCuGCUGCU-GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 135110 | 0.68 | 0.877168 |
Target: 5'- gGCG-CUCGGGC-UCGAgcCGGCgGGCGGCc -3' miRNA: 3'- -UGCuGAGCCUGcAGCU--GCUG-CUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 45905 | 0.68 | 0.877168 |
Target: 5'- gGCGACcggCGGGucucccCGggggCGAgGACGACGGCc -3' miRNA: 3'- -UGCUGa--GCCU------GCa---GCUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 66056 | 0.68 | 0.875045 |
Target: 5'- uGCGAUUCGGggGCGggggggccauguccUCGACGcCGugGAUg -3' miRNA: 3'- -UGCUGAGCC--UGC--------------AGCUGCuGCugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 39398 | 0.68 | 0.870016 |
Target: 5'- cCGaACUCGGGC-UCGGgGGCGccGCGGCg -3' miRNA: 3'- uGC-UGAGCCUGcAGCUgCUGC--UGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 74905 | 0.68 | 0.870016 |
Target: 5'- gGCGGCgCGGcCGUCG-CGACGGCc-- -3' miRNA: 3'- -UGCUGaGCCuGCAGCuGCUGCUGcug -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 2457 | 0.68 | 0.870016 |
Target: 5'- cGCGGCcCaGGCG-CGGCGGCGGCG-Cg -3' miRNA: 3'- -UGCUGaGcCUGCaGCUGCUGCUGCuG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 52269 | 0.68 | 0.870016 |
Target: 5'- cCGAUgCGGGCG-CGGCGuCGACGcGCa -3' miRNA: 3'- uGCUGaGCCUGCaGCUGCuGCUGC-UG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 2328 | 0.68 | 0.870016 |
Target: 5'- cGCG-CgCGGGCGagUCGGCGGCG-CGGCc -3' miRNA: 3'- -UGCuGaGCCUGC--AGCUGCUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 65384 | 0.68 | 0.86929 |
Target: 5'- cGCGgaACUCGGACauggcggGUCGAgGGCGcuuCGGCg -3' miRNA: 3'- -UGC--UGAGCCUG-------CAGCUgCUGCu--GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 103113 | 0.69 | 0.862658 |
Target: 5'- cCGGCggCGGACG-CGGgGGCGGCG-Cg -3' miRNA: 3'- uGCUGa-GCCUGCaGCUgCUGCUGCuG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 10071 | 0.69 | 0.862658 |
Target: 5'- cAUGACguaGGGgucguCGUCGugGGCGAgCGGCa -3' miRNA: 3'- -UGCUGag-CCU-----GCAGCugCUGCU-GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 99929 | 0.69 | 0.862658 |
Target: 5'- gGCG-CUCGGGCG-CGGCGGacggGAgGGCg -3' miRNA: 3'- -UGCuGAGCCUGCaGCUGCUg---CUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 2014 | 0.69 | 0.862658 |
Target: 5'- gGCGucCUCGG-CGUCGGCGagcaGCGuguCGGCg -3' miRNA: 3'- -UGCu-GAGCCuGCAGCUGC----UGCu--GCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 88677 | 0.69 | 0.855099 |
Target: 5'- uGCGGCgCGGGCugcgcgccgCGGcCGGCGGCGGCa -3' miRNA: 3'- -UGCUGaGCCUGca-------GCU-GCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3601 | 0.69 | 0.855099 |
Target: 5'- aGCGGCgCGGcgGCGcCGGCGACGA-GGCc -3' miRNA: 3'- -UGCUGaGCC--UGCaGCUGCUGCUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3238 | 0.69 | 0.855099 |
Target: 5'- gGCGGCgugUGGGCGggcccgGGCGGCGcGCGGCg -3' miRNA: 3'- -UGCUGa--GCCUGCag----CUGCUGC-UGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 82751 | 0.69 | 0.847344 |
Target: 5'- gACGGCggacgaGGACGUCGAgGuCGGgGGCc -3' miRNA: 3'- -UGCUGag----CCUGCAGCUgCuGCUgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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