miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 1879 0.66 0.936505
Target:  5'- cGCGGg-CGGGgGUCG-CgGGCGGCGGCg -3'
miRNA:   3'- -UGCUgaGCCUgCAGCuG-CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2014 0.69 0.862658
Target:  5'- gGCGucCUCGG-CGUCGGCGagcaGCGuguCGGCg -3'
miRNA:   3'- -UGCu-GAGCCuGCAGCUGC----UGCu--GCUG- -5'
31130 3' -55.3 NC_006560.1 + 2074 0.66 0.952663
Target:  5'- cGCGGCggCGGgguccgggggcccgGCGUCGGCGcgcagcACGAgCGGCg -3'
miRNA:   3'- -UGCUGa-GCC--------------UGCAGCUGC------UGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 2292 0.75 0.533272
Target:  5'- cGCGGCggaagUCGGGCG-CGcCGGCGGCGGCc -3'
miRNA:   3'- -UGCUG-----AGCCUGCaGCuGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2328 0.68 0.870016
Target:  5'- cGCG-CgCGGGCGagUCGGCGGCG-CGGCc -3'
miRNA:   3'- -UGCuGaGCCUGC--AGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2371 0.66 0.941179
Target:  5'- cACGGCgcggCGGuacuCGcgCGGCGGCaGCGGCa -3'
miRNA:   3'- -UGCUGa---GCCu---GCa-GCUGCUGcUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2457 0.68 0.870016
Target:  5'- cGCGGCcCaGGCG-CGGCGGCGGCG-Cg -3'
miRNA:   3'- -UGCUGaGcCUGCaGCUGCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 2578 0.71 0.722375
Target:  5'- cGCGGCgggccagCGGACGUCGcacugcGCGGCGggcagcACGGCg -3'
miRNA:   3'- -UGCUGa------GCCUGCAGC------UGCUGC------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2681 0.74 0.562723
Target:  5'- gGCGGCaCGG-CGUCcACGACGACGAg -3'
miRNA:   3'- -UGCUGaGCCuGCAGcUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 3156 0.67 0.931601
Target:  5'- -gGGCUCggggaagagcgGGugGUcCGAgagcuCGGCGACGACg -3'
miRNA:   3'- ugCUGAG-----------CCugCA-GCU-----GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3199 0.75 0.533272
Target:  5'- cGCGGCUCGcaguaGGCcUCGAgGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAGC-----CUGcAGCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3238 0.69 0.855099
Target:  5'- gGCGGCgugUGGGCGggcccgGGCGGCGcGCGGCg -3'
miRNA:   3'- -UGCUGa--GCCUGCag----CUGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3342 0.76 0.485513
Target:  5'- gGCGGCgUCGG-CGUCGGCGuCGGCGuCg -3'
miRNA:   3'- -UGCUG-AGCCuGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 3426 0.66 0.941179
Target:  5'- gGCGGCgggcgCGGGCGcccgCGGgGGCGAgGAg -3'
miRNA:   3'- -UGCUGa----GCCUGCa---GCUgCUGCUgCUg -5'
31130 3' -55.3 NC_006560.1 + 3483 0.83 0.214554
Target:  5'- gGCGGCgUCGG-CGUCGGCGuCGGCGGCg -3'
miRNA:   3'- -UGCUG-AGCCuGCAGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3526 0.72 0.692877
Target:  5'- -aGGCUCuGGuuccggaagagcAgGUCGGCGGCGGCGGCg -3'
miRNA:   3'- ugCUGAG-CC------------UgCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3601 0.69 0.855099
Target:  5'- aGCGGCgCGGcgGCGcCGGCGACGA-GGCc -3'
miRNA:   3'- -UGCUGaGCC--UGCaGCUGCUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 3630 0.74 0.602616
Target:  5'- cACGGCgCGcACGgCGGCGACGGCGGCc -3'
miRNA:   3'- -UGCUGaGCcUGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3751 0.77 0.439888
Target:  5'- cGCGGCgCGGGCG-CGGCGGCGccgcGCGGCg -3'
miRNA:   3'- -UGCUGaGCCUGCaGCUGCUGC----UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3888 0.83 0.209418
Target:  5'- gGCGGCgUCGGcgGCGUCGGCGGCGuCGGCg -3'
miRNA:   3'- -UGCUG-AGCC--UGCAGCUGCUGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.