miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 31953 0.66 0.957613
Target:  5'- gGCGGC-CGGGCGggGGCG-CGA-GACa -3'
miRNA:   3'- -UGCUGaGCCUGCagCUGCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 32158 0.66 0.953838
Target:  5'- -gGGC-CGGGCGUcccCGGCGcCGAgGGCg -3'
miRNA:   3'- ugCUGaGCCUGCA---GCUGCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 32934 0.66 0.953838
Target:  5'- -gGGCagGGGgcCGUCGccgcCGGCGGCGACg -3'
miRNA:   3'- ugCUGagCCU--GCAGCu---GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 34623 0.66 0.947339
Target:  5'- cGCGGCUCGGGgGcgCGgaggucgcaccggggACGcGCGGCGGCc -3'
miRNA:   3'- -UGCUGAGCCUgCa-GC---------------UGC-UGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 39398 0.68 0.870016
Target:  5'- cCGaACUCGGGC-UCGGgGGCGccGCGGCg -3'
miRNA:   3'- uGC-UGAGCCUGcAGCUgCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 39618 0.71 0.759679
Target:  5'- aGCGcCgcggCGGGCGUCGGCGuccgggcGCGGCGGa -3'
miRNA:   3'- -UGCuGa---GCCUGCAGCUGC-------UGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 39965 0.67 0.926465
Target:  5'- gGCGGCgCGGGCGgcugCGugugcucgccGCGAcucCGGCGACa -3'
miRNA:   3'- -UGCUGaGCCUGCa---GC----------UGCU---GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 40861 0.69 0.847344
Target:  5'- cACGACcCGGAgcccCGagccgGGCGGCGGCGACa -3'
miRNA:   3'- -UGCUGaGCCU----GCag---CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 41441 0.7 0.779111
Target:  5'- gGCGuGCUCGGgaaaguGCGUCuccaGACaGGCGACGACc -3'
miRNA:   3'- -UGC-UGAGCC------UGCAG----CUG-CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 43290 0.76 0.466981
Target:  5'- gGCGcCggucucgCGGACGUCGGCGGCGAUG-Cg -3'
miRNA:   3'- -UGCuGa------GCCUGCAGCUGCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 43419 0.72 0.70277
Target:  5'- cGCGGCgccggGGGCGUCGGCG-CG-CGGCa -3'
miRNA:   3'- -UGCUGag---CCUGCAGCUGCuGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 45576 0.67 0.931601
Target:  5'- cCGGC-CGGgaccuccacGCGcUUGugGACGACGAUg -3'
miRNA:   3'- uGCUGaGCC---------UGC-AGCugCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 45905 0.68 0.877168
Target:  5'- gGCGACcggCGGGucucccCGggggCGAgGACGACGGCc -3'
miRNA:   3'- -UGCUGa--GCCU------GCa---GCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 46506 0.67 0.926465
Target:  5'- cGCGugUCGu-CGUCGGCgGGCGGaGGCg -3'
miRNA:   3'- -UGCugAGCcuGCAGCUG-CUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 49348 0.69 0.822975
Target:  5'- gACGACUUugaccuGACGcugcUCGGgGACGACGACc -3'
miRNA:   3'- -UGCUGAGc-----CUGC----AGCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 50056 0.69 0.822975
Target:  5'- gACGACgucaUGGACuaCGACaGCGACGACg -3'
miRNA:   3'- -UGCUGa---GCCUGcaGCUGcUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 50196 0.75 0.543033
Target:  5'- cACGGCccCGGACGcCcccgGGCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCUGCaG----CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 50401 0.73 0.632779
Target:  5'- gGCGACUaccCGGGCG-CGGCGGgGGCGGa -3'
miRNA:   3'- -UGCUGA---GCCUGCaGCUGCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 51619 0.7 0.814506
Target:  5'- uCGACggCGGGCG-CGGCGAgcccgcCGugGGCg -3'
miRNA:   3'- uGCUGa-GCCUGCaGCUGCU------GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 51924 0.66 0.945624
Target:  5'- gGCGGCUCcucauGGGCGaCGAgGA-GGCGGCc -3'
miRNA:   3'- -UGCUGAG-----CCUGCaGCUgCUgCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.