miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 51968 0.66 0.957613
Target:  5'- cACGugUcCGGGCGgcgGGCGGCGGgccugcCGGCg -3'
miRNA:   3'- -UGCugA-GCCUGCag-CUGCUGCU------GCUG- -5'
31130 3' -55.3 NC_006560.1 + 52269 0.68 0.870016
Target:  5'- cCGAUgCGGGCG-CGGCGuCGACGcGCa -3'
miRNA:   3'- uGCUGaGCCUGCaGCUGCuGCUGC-UG- -5'
31130 3' -55.3 NC_006560.1 + 52536 0.69 0.839401
Target:  5'- -aGGCggGGGCGUCGA--GCGGCGGCc -3'
miRNA:   3'- ugCUGagCCUGCAGCUgcUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 53480 0.68 0.884108
Target:  5'- -aGGC-CGcGGCGgcgcgCGAgGACGACGACc -3'
miRNA:   3'- ugCUGaGC-CUGCa----GCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 53907 0.66 0.957613
Target:  5'- aGCGACUCGGAggagccCGUCuACGAgGA-GAUc -3'
miRNA:   3'- -UGCUGAGCCU------GCAGcUGCUgCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 54622 0.67 0.903619
Target:  5'- cGCGAC-CGcGGCGagcugcUUGGCGACGGCGcGCg -3'
miRNA:   3'- -UGCUGaGC-CUGC------AGCUGCUGCUGC-UG- -5'
31130 3' -55.3 NC_006560.1 + 54950 0.7 0.814506
Target:  5'- -gGGCUCGcGCGcCGGCGGCGggggagGCGACg -3'
miRNA:   3'- ugCUGAGCcUGCaGCUGCUGC------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55220 0.66 0.949843
Target:  5'- cGCGGCgcgCGcaGACGcCGACGcccACGGCGAg -3'
miRNA:   3'- -UGCUGa--GC--CUGCaGCUGC---UGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 55260 0.73 0.662937
Target:  5'- cGCGGCcgCGGACcccgCGGCGACGcCGGCc -3'
miRNA:   3'- -UGCUGa-GCCUGca--GCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55468 0.7 0.814506
Target:  5'- -gGGCagGGccCGcCGGCGACGACGGCg -3'
miRNA:   3'- ugCUGagCCu-GCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 57136 0.69 0.822975
Target:  5'- cACGACcgCgGGGCGUCGGCGcCGACc-- -3'
miRNA:   3'- -UGCUGa-G-CCUGCAGCUGCuGCUGcug -5'
31130 3' -55.3 NC_006560.1 + 57181 0.73 0.632779
Target:  5'- cCGaACUCGGAgGcgagcgCGGCGGCGACGAg -3'
miRNA:   3'- uGC-UGAGCCUgCa-----GCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 58906 0.67 0.903619
Target:  5'- cGCGGCgCGGAgcucCGUCGcgccCGACGcCGACu -3'
miRNA:   3'- -UGCUGaGCCU----GCAGCu---GCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 59497 0.67 0.926465
Target:  5'- gACGGCgguGugGcCGGUGACGACGACu -3'
miRNA:   3'- -UGCUGagcCugCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 60750 0.69 0.839401
Target:  5'- cCGACagCuGGCGgggGACGACGGCGACu -3'
miRNA:   3'- uGCUGa-GcCUGCag-CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 62939 0.69 0.822975
Target:  5'- cGCGAacccCUCGcuGACGUCGGCGAgcugcgccgaGGCGACg -3'
miRNA:   3'- -UGCU----GAGC--CUGCAGCUGCUg---------CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 63471 0.69 0.839401
Target:  5'- cCG-CUCugcuGGGCGUUGGCGGgGugGACg -3'
miRNA:   3'- uGCuGAG----CCUGCAGCUGCUgCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 64918 0.67 0.915501
Target:  5'- aGCGGCaCGGggaACGUCGAgCGGgGACGGg -3'
miRNA:   3'- -UGCUGaGCC---UGCAGCU-GCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 65342 0.77 0.452421
Target:  5'- cCGGCUCGccggccccagcccCGUCGGCGGCGGCGGCg -3'
miRNA:   3'- uGCUGAGCcu-----------GCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 65384 0.68 0.86929
Target:  5'- cGCGgaACUCGGACauggcggGUCGAgGGCGcuuCGGCg -3'
miRNA:   3'- -UGC--UGAGCCUG-------CAGCUgCUGCu--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.