Results 101 - 120 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 66056 | 0.68 | 0.875045 |
Target: 5'- uGCGAUUCGGggGCGggggggccauguccUCGACGcCGugGAUg -3' miRNA: 3'- -UGCUGAGCC--UGC--------------AGCUGCuGCugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 71633 | 0.69 | 0.839401 |
Target: 5'- gACGGCUgccUGGugGagGGCGggGCGugGACg -3' miRNA: 3'- -UGCUGA---GCCugCagCUGC--UGCugCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 71896 | 0.72 | 0.672952 |
Target: 5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3' miRNA: 3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 72182 | 0.71 | 0.769923 |
Target: 5'- aGCGACgcgcCGuGGCGUCccacccgcugcGCGGCGACGACg -3' miRNA: 3'- -UGCUGa---GC-CUGCAGc----------UGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 72426 | 0.78 | 0.396804 |
Target: 5'- cGCGAC-C-GACGUCGACGAuacCGACGGCg -3' miRNA: 3'- -UGCUGaGcCUGCAGCUGCU---GCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 73334 | 0.73 | 0.622715 |
Target: 5'- -gGGCUCGGGCGUCGGCcgccuGGCGcUGGCc -3' miRNA: 3'- ugCUGAGCCUGCAGCUG-----CUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 73670 | 0.68 | 0.884108 |
Target: 5'- -gGACgCGGugGcgCGGCG-CGGCGGCc -3' miRNA: 3'- ugCUGaGCCugCa-GCUGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 74905 | 0.68 | 0.870016 |
Target: 5'- gGCGGCgCGGcCGUCG-CGACGGCc-- -3' miRNA: 3'- -UGCUGaGCCuGCAGCuGCUGCUGcug -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 75113 | 0.71 | 0.731104 |
Target: 5'- cGCGGCUCGGggcccugggggccGCGgccgcCGACcuGGCGGCGGCg -3' miRNA: 3'- -UGCUGAGCC-------------UGCa----GCUG--CUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 75339 | 0.68 | 0.890833 |
Target: 5'- -gGGCaaGGugGUCGggGCGACGcgGCGGCg -3' miRNA: 3'- ugCUGagCCugCAGC--UGCUGC--UGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 75439 | 0.7 | 0.779111 |
Target: 5'- cGCGAgCgcugggucgCGGACGUCGACG-CGGCG-Cu -3' miRNA: 3'- -UGCU-Ga--------GCCUGCAGCUGCuGCUGCuG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 77585 | 0.71 | 0.773613 |
Target: 5'- cGCGACUCGGugGcCGcggccgccgagcuguACGccgcccuggucGCGACGACc -3' miRNA: 3'- -UGCUGAGCCugCaGC---------------UGC-----------UGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 78742 | 0.67 | 0.903619 |
Target: 5'- -gGGCcccCGGACGugcgcuUCGugGGCGGCGAg -3' miRNA: 3'- ugCUGa--GCCUGC------AGCugCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 80371 | 0.67 | 0.903619 |
Target: 5'- -gGACUCGGACGaauccUCgGugGACGccaaccccaACGACc -3' miRNA: 3'- ugCUGAGCCUGC-----AG-CugCUGC---------UGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 81214 | 0.69 | 0.831275 |
Target: 5'- gGCGAC-CGGGagGagGACGGCGGCGGa -3' miRNA: 3'- -UGCUGaGCCUg-CagCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 82598 | 0.67 | 0.920549 |
Target: 5'- cGCGGCUcgccccgaggcccCGGACGgCGGCugGGCGGCGGg -3' miRNA: 3'- -UGCUGA-------------GCCUGCaGCUG--CUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 82751 | 0.69 | 0.847344 |
Target: 5'- gACGGCggacgaGGACGUCGAgGuCGGgGGCc -3' miRNA: 3'- -UGCUGag----CCUGCAGCUgCuGCUgCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 83442 | 0.69 | 0.839401 |
Target: 5'- -aGGgUCGG-CG-CGGCGGCGGCGAg -3' miRNA: 3'- ugCUgAGCCuGCaGCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 83912 | 0.71 | 0.769923 |
Target: 5'- uCGACUgcaucgcgcCGGugGUCGAcCGAaUGGCGGCg -3' miRNA: 3'- uGCUGA---------GCCugCAGCU-GCU-GCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 84391 | 0.68 | 0.897337 |
Target: 5'- cCGGCUCGccCG-CGACGACGGCaggGGCg -3' miRNA: 3'- uGCUGAGCcuGCaGCUGCUGCUG---CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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