miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 150033 0.71 0.73207
Target:  5'- cCGACggCGGGCGagGACGACcuccGCGGCg -3'
miRNA:   3'- uGCUGa-GCCUGCagCUGCUGc---UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 149919 0.69 0.847344
Target:  5'- gGCGGC-CGGGCG-CGGCGuCGGUGGCc -3'
miRNA:   3'- -UGCUGaGCCUGCaGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 149325 0.68 0.897337
Target:  5'- aACGGCg-GGcCGgaGACGGCGGCGGCu -3'
miRNA:   3'- -UGCUGagCCuGCagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 148507 0.7 0.788172
Target:  5'- cCGGCg-GGACGgCGGucCGACGGCGACu -3'
miRNA:   3'- uGCUGagCCUGCaGCU--GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 147982 0.66 0.953838
Target:  5'- cCGugUCGG-CGUCGGaGGCGG-GGCg -3'
miRNA:   3'- uGCugAGCCuGCAGCUgCUGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 146408 0.67 0.903001
Target:  5'- aGCGGCgggCGGagGCGgagCGGCGGagccccgaggagcCGACGACg -3'
miRNA:   3'- -UGCUGa--GCC--UGCa--GCUGCU-------------GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 144358 0.66 0.957613
Target:  5'- gACGGCcgCGGGgcCG-CGGCGGCaggGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCU--GCaGCUGCUG---CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 142963 0.68 0.884108
Target:  5'- gGCGACgcgCGGGcCGcCG-CGGCGAgCGACc -3'
miRNA:   3'- -UGCUGa--GCCU-GCaGCuGCUGCU-GCUG- -5'
31130 3' -55.3 NC_006560.1 + 142357 0.73 0.622715
Target:  5'- cGCGcCUCGGGgGcCGGgGGCGGCGGCc -3'
miRNA:   3'- -UGCuGAGCCUgCaGCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 141575 0.72 0.70277
Target:  5'- cCGGCUC-GACccCGGCGGCGGCGGCc -3'
miRNA:   3'- uGCUGAGcCUGcaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 140343 0.7 0.804133
Target:  5'- cCGGCgggacagccccgCGGGCGUCGGCG-CGGCG-Cg -3'
miRNA:   3'- uGCUGa-----------GCCUGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 139552 0.73 0.622715
Target:  5'- gGCGGaa-GGGCGUgGugGGCGACGAg -3'
miRNA:   3'- -UGCUgagCCUGCAgCugCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 135110 0.68 0.877168
Target:  5'- gGCG-CUCGGGC-UCGAgcCGGCgGGCGGCc -3'
miRNA:   3'- -UGCuGAGCCUGcAGCU--GCUG-CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 135051 0.7 0.779111
Target:  5'- cACGcGCUCGGccaccgcggcgACGUCGGCGuCGGgGGCg -3'
miRNA:   3'- -UGC-UGAGCC-----------UGCAGCUGCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 134524 0.67 0.903619
Target:  5'- gGCGGCguugCGGACG-CGGCaGACG-CGGg -3'
miRNA:   3'- -UGCUGa---GCCUGCaGCUG-CUGCuGCUg -5'
31130 3' -55.3 NC_006560.1 + 133559 0.86 0.140738
Target:  5'- cGCGGCguggCGGACGUCGGCGACGAagagGGCg -3'
miRNA:   3'- -UGCUGa---GCCUGCAGCUGCUGCUg---CUG- -5'
31130 3' -55.3 NC_006560.1 + 133517 0.67 0.931601
Target:  5'- cCGGC-CGGG-GUCGGCGGCuucGugGGCg -3'
miRNA:   3'- uGCUGaGCCUgCAGCUGCUG---CugCUG- -5'
31130 3' -55.3 NC_006560.1 + 132894 0.67 0.926465
Target:  5'- cGCGGuCgaaGGGCGacgugCGGCGGcCGACGGCg -3'
miRNA:   3'- -UGCU-Gag-CCUGCa----GCUGCU-GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 131824 0.66 0.949432
Target:  5'- cGCaGCgCGGgcccgcguacgccGCGgCGGCGGCGGCGACg -3'
miRNA:   3'- -UGcUGaGCC-------------UGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 131522 0.83 0.214554
Target:  5'- uGCGGCUCGaGGCGgcggcCGGCGACGugGACc -3'
miRNA:   3'- -UGCUGAGC-CUGCa----GCUGCUGCugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.