miRNA display CGI


Results 21 - 40 of 193 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 131162 0.68 0.897337
Target:  5'- cGCGGCUCuGGGCGgCGGCcgccGCGGgGGCg -3'
miRNA:   3'- -UGCUGAG-CCUGCaGCUGc---UGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 130608 0.67 0.921099
Target:  5'- cGCGGC-CGGcCGcgCGGCuGGCGugGGCc -3'
miRNA:   3'- -UGCUGaGCCuGCa-GCUG-CUGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 130414 0.67 0.931601
Target:  5'- gGCGGCccUGGAgCG-CGAgGugGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCU-GCaGCUgCugCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 130295 0.71 0.769923
Target:  5'- gGCGAgauCUCGGcCGcCGGCGcggugGCGGCGGCg -3'
miRNA:   3'- -UGCU---GAGCCuGCaGCUGC-----UGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 130043 0.76 0.466981
Target:  5'- aGCGAaaCGGGCGgCGGCG-CGACGACa -3'
miRNA:   3'- -UGCUgaGCCUGCaGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 129445 0.66 0.953838
Target:  5'- uGCG-CUgGGAC-UCGGCGGCGGgGGg -3'
miRNA:   3'- -UGCuGAgCCUGcAGCUGCUGCUgCUg -5'
31130 3' -55.3 NC_006560.1 + 127152 0.72 0.682934
Target:  5'- uGCGGgUCGcGGCGUCGAgcuCGGCGGCGuCc -3'
miRNA:   3'- -UGCUgAGC-CUGCAGCU---GCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 126662 0.7 0.797097
Target:  5'- gACGACgccggCGGcCG-CGAUGGCGcCGACg -3'
miRNA:   3'- -UGCUGa----GCCuGCaGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 126042 0.66 0.949843
Target:  5'- gGCGACcccgUGGGCGggGGCGAUGugG-Ca -3'
miRNA:   3'- -UGCUGa---GCCUGCagCUGCUGCugCuG- -5'
31130 3' -55.3 NC_006560.1 + 125036 0.67 0.915501
Target:  5'- gGCGGCUgGuGGCG-CGGCGGuCGcCGGCg -3'
miRNA:   3'- -UGCUGAgC-CUGCaGCUGCU-GCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 124759 0.66 0.957613
Target:  5'- gACGAC-CGcGACGcCGAgGGgGGCGAg -3'
miRNA:   3'- -UGCUGaGC-CUGCaGCUgCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 124245 0.7 0.805878
Target:  5'- cCGACgcccCGGACGUCGAgcCGugGugGuCc -3'
miRNA:   3'- uGCUGa---GCCUGCAGCU--GCugCugCuG- -5'
31130 3' -55.3 NC_006560.1 + 119641 0.67 0.903619
Target:  5'- cGCGcGCaucgCGGAgGUCGACGcCGACG-Cg -3'
miRNA:   3'- -UGC-UGa---GCCUgCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 118131 0.7 0.797097
Target:  5'- cGCGGCgccgggggCGGACG-CGGCGgaccGCGAgGACg -3'
miRNA:   3'- -UGCUGa-------GCCUGCaGCUGC----UGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 118058 0.67 0.921646
Target:  5'- cCGGCgccgccgCGGGCGcccccgccgagcucgCGGCgGGCGACGACg -3'
miRNA:   3'- uGCUGa------GCCUGCa--------------GCUG-CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 118032 0.66 0.949843
Target:  5'- gGCGGCg-GGGC-UCGGCGGgGGCGGg -3'
miRNA:   3'- -UGCUGagCCUGcAGCUGCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 117973 0.67 0.903619
Target:  5'- uACGugUggcgccUGGGCG-CGGCGGCGcccGCGGCg -3'
miRNA:   3'- -UGCugA------GCCUGCaGCUGCUGC---UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 117895 0.72 0.691885
Target:  5'- gGCGAgCUCGuGGCGcCGACGAcgcgcuacgccgcCGACGGCc -3'
miRNA:   3'- -UGCU-GAGC-CUGCaGCUGCU-------------GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 116641 0.66 0.941179
Target:  5'- cGCGGCgcagcgCGcGAUGUCGuCGGCGGcCGAg -3'
miRNA:   3'- -UGCUGa-----GC-CUGCAGCuGCUGCU-GCUg -5'
31130 3' -55.3 NC_006560.1 + 116522 0.77 0.439888
Target:  5'- uCGGCguggaggCGGGCGgCGAUGGCGACGGCc -3'
miRNA:   3'- uGCUGa------GCCUGCaGCUGCUGCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.