miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 114616 0.67 0.903619
Target:  5'- -gGGCUcugCGG-UGUCaACGGCGACGGCg -3'
miRNA:   3'- ugCUGA---GCCuGCAGcUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 114364 0.67 0.926465
Target:  5'- cGCGuACgCGGGCGaCcGCGAgGGCGACg -3'
miRNA:   3'- -UGC-UGaGCCUGCaGcUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 112370 0.67 0.931601
Target:  5'- uCGACUucuucgUGGGgGUCGcCGACGuCGACc -3'
miRNA:   3'- uGCUGA------GCCUgCAGCuGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 109163 0.66 0.936025
Target:  5'- gGCGAuCUCGccgggccGGCgGUCG-CGugGGCGGCa -3'
miRNA:   3'- -UGCU-GAGC-------CUG-CAGCuGCugCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 108962 0.77 0.44882
Target:  5'- gACGAcCUCGGcguccgcgGCGUUGACGACGuCGGCc -3'
miRNA:   3'- -UGCU-GAGCC--------UGCAGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 108027 0.66 0.945624
Target:  5'- cGCGACgCGGAgcacCGUCu-CGGCGuCGGCg -3'
miRNA:   3'- -UGCUGaGCCU----GCAGcuGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 107110 0.67 0.931601
Target:  5'- cGCGGCgUGGGCuaucggcugGUCGGCGuCGACGuCa -3'
miRNA:   3'- -UGCUGaGCCUG---------CAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 103982 0.71 0.741681
Target:  5'- gGCGAgauCUCGGuCGccgaGGCGGCGAUGGCa -3'
miRNA:   3'- -UGCU---GAGCCuGCag--CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 103113 0.69 0.862658
Target:  5'- cCGGCggCGGACG-CGGgGGCGGCG-Cg -3'
miRNA:   3'- uGCUGa-GCCUGCaGCUgCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 102817 0.66 0.953838
Target:  5'- uCGAgUCGcGCGcCGGCGACGcgagggggGCGGCg -3'
miRNA:   3'- uGCUgAGCcUGCaGCUGCUGC--------UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 102687 0.73 0.612659
Target:  5'- gAUGaaGCUCcuGGCGUCGGCGACGAUGAa -3'
miRNA:   3'- -UGC--UGAGc-CUGCAGCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 102408 0.71 0.760616
Target:  5'- gGCGGcCUCGGGCG-CGGCcGCGGCGuCc -3'
miRNA:   3'- -UGCU-GAGCCUGCaGCUGcUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 101761 0.67 0.915501
Target:  5'- gGCGGCcgcgucgCGGggcACGUCGcCGGgGGCGGCg -3'
miRNA:   3'- -UGCUGa------GCC---UGCAGCuGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 101691 0.75 0.533272
Target:  5'- cGCGGCUCaGGAa---GGCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAG-CCUgcagCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 101317 0.68 0.890833
Target:  5'- cACGACgcgccgcgCGGGCG-CGACGGCG-CGuCc -3'
miRNA:   3'- -UGCUGa-------GCCUGCaGCUGCUGCuGCuG- -5'
31130 3' -55.3 NC_006560.1 + 101180 0.67 0.932101
Target:  5'- --uGCUCGuacuggaucgccagcGCGUCGugGGCGGCGAUg -3'
miRNA:   3'- ugcUGAGCc--------------UGCAGCugCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 100631 0.66 0.953838
Target:  5'- aGCGGacgCGGugGUCcACGuuGAUGGCg -3'
miRNA:   3'- -UGCUga-GCCugCAGcUGCugCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 99929 0.69 0.862658
Target:  5'- gGCG-CUCGGGCG-CGGCGGacggGAgGGCg -3'
miRNA:   3'- -UGCuGAGCCUGCaGCUGCUg---CUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 99876 0.71 0.751199
Target:  5'- -gGGCgCGGGgGUCGugG-CGGCGGCg -3'
miRNA:   3'- ugCUGaGCCUgCAGCugCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 99610 0.68 0.884108
Target:  5'- cGCGGCgggGGGCGgcuggCGguccGCGGCGAUGGCg -3'
miRNA:   3'- -UGCUGag-CCUGCa----GC----UGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.