miRNA display CGI


Results 61 - 80 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 98427 0.77 0.436343
Target:  5'- aGCGACggcgcgccgcuggCGGGCGgCGGCGAgGACGGCg -3'
miRNA:   3'- -UGCUGa------------GCCUGCaGCUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 96088 0.78 0.396804
Target:  5'- cGCGGC-CGGACGagccgcccccgCGGCGGCGGCGGCc -3'
miRNA:   3'- -UGCUGaGCCUGCa----------GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 95306 0.68 0.890833
Target:  5'- gACGGC-CGcGGCGggGACGGuCGugGACa -3'
miRNA:   3'- -UGCUGaGC-CUGCagCUGCU-GCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 94522 0.68 0.884108
Target:  5'- cGCGGCcccgCGGACGagUCGGCGcgccGCGAggcCGACg -3'
miRNA:   3'- -UGCUGa---GCCUGC--AGCUGC----UGCU---GCUG- -5'
31130 3' -55.3 NC_006560.1 + 94077 0.7 0.779111
Target:  5'- uCGGCUgGaGACGUaCGGCGgggGCGugGACa -3'
miRNA:   3'- uGCUGAgC-CUGCA-GCUGC---UGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 93668 0.84 0.172043
Target:  5'- uCGGCUCcGGCGUCGGCGGCGgACGACg -3'
miRNA:   3'- uGCUGAGcCUGCAGCUGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 93002 0.75 0.532299
Target:  5'- uCGACUUcgGGGCGUucggggcCGAgGACGACGACg -3'
miRNA:   3'- uGCUGAG--CCUGCA-------GCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 92977 0.7 0.805878
Target:  5'- gGCGGCgCGGACGUCGGgGA-GGCGu- -3'
miRNA:   3'- -UGCUGaGCCUGCAGCUgCUgCUGCug -5'
31130 3' -55.3 NC_006560.1 + 92902 0.67 0.926465
Target:  5'- cGCGGCggCGGcgaGUgGACGACcgaGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCug-CAgCUGCUG---CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 90726 0.67 0.915501
Target:  5'- cAUGAC-C-GAgGUCGACGACGcCGGCc -3'
miRNA:   3'- -UGCUGaGcCUgCAGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 89788 0.66 0.941179
Target:  5'- cACGAC-CGGGC-UCGGgGGC-ACGGCg -3'
miRNA:   3'- -UGCUGaGCCUGcAGCUgCUGcUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 88677 0.69 0.855099
Target:  5'- uGCGGCgCGGGCugcgcgccgCGGcCGGCGGCGGCa -3'
miRNA:   3'- -UGCUGaGCCUGca-------GCU-GCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 85569 0.7 0.814506
Target:  5'- gGCGGCUCGGggGCGgggggcgCGGCGgGCG-CGGCg -3'
miRNA:   3'- -UGCUGAGCC--UGCa------GCUGC-UGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 84391 0.68 0.897337
Target:  5'- cCGGCUCGccCG-CGACGACGGCaggGGCg -3'
miRNA:   3'- uGCUGAGCcuGCaGCUGCUGCUG---CUG- -5'
31130 3' -55.3 NC_006560.1 + 83912 0.71 0.769923
Target:  5'- uCGACUgcaucgcgcCGGugGUCGAcCGAaUGGCGGCg -3'
miRNA:   3'- uGCUGA---------GCCugCAGCU-GCU-GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 83442 0.69 0.839401
Target:  5'- -aGGgUCGG-CG-CGGCGGCGGCGAg -3'
miRNA:   3'- ugCUgAGCCuGCaGCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 82751 0.69 0.847344
Target:  5'- gACGGCggacgaGGACGUCGAgGuCGGgGGCc -3'
miRNA:   3'- -UGCUGag----CCUGCAGCUgCuGCUgCUG- -5'
31130 3' -55.3 NC_006560.1 + 82598 0.67 0.920549
Target:  5'- cGCGGCUcgccccgaggcccCGGACGgCGGCugGGCGGCGGg -3'
miRNA:   3'- -UGCUGA-------------GCCUGCaGCUG--CUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 81214 0.69 0.831275
Target:  5'- gGCGAC-CGGGagGagGACGGCGGCGGa -3'
miRNA:   3'- -UGCUGaGCCUg-CagCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 80371 0.67 0.903619
Target:  5'- -gGACUCGGACGaauccUCgGugGACGccaaccccaACGACc -3'
miRNA:   3'- ugCUGAGCCUGC-----AG-CugCUGC---------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.