miRNA display CGI


Results 81 - 100 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 78742 0.67 0.903619
Target:  5'- -gGGCcccCGGACGugcgcuUCGugGGCGGCGAg -3'
miRNA:   3'- ugCUGa--GCCUGC------AGCugCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 77585 0.71 0.773613
Target:  5'- cGCGACUCGGugGcCGcggccgccgagcuguACGccgcccuggucGCGACGACc -3'
miRNA:   3'- -UGCUGAGCCugCaGC---------------UGC-----------UGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 75439 0.7 0.779111
Target:  5'- cGCGAgCgcugggucgCGGACGUCGACG-CGGCG-Cu -3'
miRNA:   3'- -UGCU-Ga--------GCCUGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 75339 0.68 0.890833
Target:  5'- -gGGCaaGGugGUCGggGCGACGcgGCGGCg -3'
miRNA:   3'- ugCUGagCCugCAGC--UGCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 75113 0.71 0.731104
Target:  5'- cGCGGCUCGGggcccugggggccGCGgccgcCGACcuGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAGCC-------------UGCa----GCUG--CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 74905 0.68 0.870016
Target:  5'- gGCGGCgCGGcCGUCG-CGACGGCc-- -3'
miRNA:   3'- -UGCUGaGCCuGCAGCuGCUGCUGcug -5'
31130 3' -55.3 NC_006560.1 + 73670 0.68 0.884108
Target:  5'- -gGACgCGGugGcgCGGCG-CGGCGGCc -3'
miRNA:   3'- ugCUGaGCCugCa-GCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 73334 0.73 0.622715
Target:  5'- -gGGCUCGGGCGUCGGCcgccuGGCGcUGGCc -3'
miRNA:   3'- ugCUGAGCCUGCAGCUG-----CUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 72426 0.78 0.396804
Target:  5'- cGCGAC-C-GACGUCGACGAuacCGACGGCg -3'
miRNA:   3'- -UGCUGaGcCUGCAGCUGCU---GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 72182 0.71 0.769923
Target:  5'- aGCGACgcgcCGuGGCGUCccacccgcugcGCGGCGACGACg -3'
miRNA:   3'- -UGCUGa---GC-CUGCAGc----------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 71896 0.72 0.672952
Target:  5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3'
miRNA:   3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 71633 0.69 0.839401
Target:  5'- gACGGCUgccUGGugGagGGCGggGCGugGACg -3'
miRNA:   3'- -UGCUGA---GCCugCagCUGC--UGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 66056 0.68 0.875045
Target:  5'- uGCGAUUCGGggGCGggggggccauguccUCGACGcCGugGAUg -3'
miRNA:   3'- -UGCUGAGCC--UGC--------------AGCUGCuGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 65384 0.68 0.86929
Target:  5'- cGCGgaACUCGGACauggcggGUCGAgGGCGcuuCGGCg -3'
miRNA:   3'- -UGC--UGAGCCUG-------CAGCUgCUGCu--GCUG- -5'
31130 3' -55.3 NC_006560.1 + 65342 0.77 0.452421
Target:  5'- cCGGCUCGccggccccagcccCGUCGGCGGCGGCGGCg -3'
miRNA:   3'- uGCUGAGCcu-----------GCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 64918 0.67 0.915501
Target:  5'- aGCGGCaCGGggaACGUCGAgCGGgGACGGg -3'
miRNA:   3'- -UGCUGaGCC---UGCAGCU-GCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 63471 0.69 0.839401
Target:  5'- cCG-CUCugcuGGGCGUUGGCGGgGugGACg -3'
miRNA:   3'- uGCuGAG----CCUGCAGCUGCUgCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 62939 0.69 0.822975
Target:  5'- cGCGAacccCUCGcuGACGUCGGCGAgcugcgccgaGGCGACg -3'
miRNA:   3'- -UGCU----GAGC--CUGCAGCUGCUg---------CUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 60750 0.69 0.839401
Target:  5'- cCGACagCuGGCGgggGACGACGGCGACu -3'
miRNA:   3'- uGCUGa-GcCUGCag-CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 59497 0.67 0.926465
Target:  5'- gACGGCgguGugGcCGGUGACGACGACu -3'
miRNA:   3'- -UGCUGagcCugCaGCUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.