miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 21306 0.66 0.957613
Target:  5'- cGCGAg-CGGGCG-CGGCGAUGcuaACGAg -3'
miRNA:   3'- -UGCUgaGCCUGCaGCUGCUGC---UGCUg -5'
31130 3' -55.3 NC_006560.1 + 22349 0.77 0.439888
Target:  5'- cGCGGCgggggaGGAgGaCGACGGCGGCGACg -3'
miRNA:   3'- -UGCUGag----CCUgCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 108962 0.77 0.44882
Target:  5'- gACGAcCUCGGcguccgcgGCGUUGACGACGuCGGCc -3'
miRNA:   3'- -UGCU-GAGCC--------UGCAGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 65342 0.77 0.452421
Target:  5'- cCGGCUCGccggccccagcccCGUCGGCGGCGGCGGCg -3'
miRNA:   3'- uGCUGAGCcu-----------GCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 43290 0.76 0.466981
Target:  5'- gGCGcCggucucgCGGACGUCGGCGGCGAUG-Cg -3'
miRNA:   3'- -UGCuGa------GCCUGCAGCUGCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 130043 0.76 0.466981
Target:  5'- aGCGAaaCGGGCGgCGGCG-CGACGACa -3'
miRNA:   3'- -UGCUgaGCCUGCaGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3342 0.76 0.485513
Target:  5'- gGCGGCgUCGG-CGUCGGCGuCGGCGuCg -3'
miRNA:   3'- -UGCUG-AGCCuGCAGCUGCuGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 4744 0.76 0.485513
Target:  5'- cCGuCUCGGcgGCGgcccgCGGCGGCGGCGGCg -3'
miRNA:   3'- uGCuGAGCC--UGCa----GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 93002 0.75 0.532299
Target:  5'- uCGACUUcgGGGCGUucggggcCGAgGACGACGACg -3'
miRNA:   3'- uGCUGAG--CCUGCA-------GCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3751 0.77 0.439888
Target:  5'- cGCGGCgCGGGCG-CGGCGGCGccgcGCGGCg -3'
miRNA:   3'- -UGCUGaGCCUGCaGCUGCUGC----UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 116522 0.77 0.439888
Target:  5'- uCGGCguggaggCGGGCGgCGAUGGCGACGGCc -3'
miRNA:   3'- uGCUGa------GCCUGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 98427 0.77 0.436343
Target:  5'- aGCGACggcgcgccgcuggCGGGCGgCGGCGAgGACGGCg -3'
miRNA:   3'- -UGCUGa------------GCCUGCaGCUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 133559 0.86 0.140738
Target:  5'- cGCGGCguggCGGACGUCGGCGACGAagagGGCg -3'
miRNA:   3'- -UGCUGa---GCCUGCAGCUGCUGCUg---CUG- -5'
31130 3' -55.3 NC_006560.1 + 93668 0.84 0.172043
Target:  5'- uCGGCUCcGGCGUCGGCGGCGgACGACg -3'
miRNA:   3'- uGCUGAGcCUGCAGCUGCUGC-UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 4850 0.83 0.189924
Target:  5'- gACGGCgccggCGGcgagguucGCGUCGACGGCGGCGGCg -3'
miRNA:   3'- -UGCUGa----GCC--------UGCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3888 0.83 0.209418
Target:  5'- gGCGGCgUCGGcgGCGUCGGCGGCGuCGGCg -3'
miRNA:   3'- -UGCUG-AGCC--UGCAGCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 131522 0.83 0.214554
Target:  5'- uGCGGCUCGaGGCGgcggcCGGCGACGugGACc -3'
miRNA:   3'- -UGCUGAGC-CUGCa----GCUGCUGCugCUG- -5'
31130 3' -55.3 NC_006560.1 + 3483 0.83 0.214554
Target:  5'- gGCGGCgUCGG-CGUCGGCGuCGGCGGCg -3'
miRNA:   3'- -UGCUG-AGCCuGCAGCUGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 72426 0.78 0.396804
Target:  5'- cGCGAC-C-GACGUCGACGAuacCGACGGCg -3'
miRNA:   3'- -UGCUGaGcCUGCAGCUGCU---GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 96088 0.78 0.396804
Target:  5'- cGCGGC-CGGACGagccgcccccgCGGCGGCGGCGGCc -3'
miRNA:   3'- -UGCUGaGCCUGCa----------GCUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.