Results 61 - 80 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 93002 | 0.75 | 0.532299 |
Target: 5'- uCGACUUcgGGGCGUucggggcCGAgGACGACGACg -3' miRNA: 3'- uGCUGAG--CCUGCA-------GCUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 2292 | 0.75 | 0.533272 |
Target: 5'- cGCGGCggaagUCGGGCG-CGcCGGCGGCGGCc -3' miRNA: 3'- -UGCUG-----AGCCUGCaGCuGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 139552 | 0.73 | 0.622715 |
Target: 5'- gGCGGaa-GGGCGUgGugGGCGACGAg -3' miRNA: 3'- -UGCUgagCCUGCAgCugCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 142357 | 0.73 | 0.622715 |
Target: 5'- cGCGcCUCGGGgGcCGGgGGCGGCGGCc -3' miRNA: 3'- -UGCuGAGCCUgCaGCUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 57181 | 0.73 | 0.632779 |
Target: 5'- cCGaACUCGGAgGcgagcgCGGCGGCGACGAg -3' miRNA: 3'- uGC-UGAGCCUgCa-----GCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 50401 | 0.73 | 0.632779 |
Target: 5'- gGCGACUaccCGGGCG-CGGCGGgGGCGGa -3' miRNA: 3'- -UGCUGA---GCCUGCaGCUGCUgCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 20933 | 0.73 | 0.662937 |
Target: 5'- -gGGC-CGG-CGgCGGCGGCGACGGCg -3' miRNA: 3'- ugCUGaGCCuGCaGCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 55260 | 0.73 | 0.662937 |
Target: 5'- cGCGGCcgCGGACcccgCGGCGACGcCGGCc -3' miRNA: 3'- -UGCUGa-GCCUGca--GCUGCUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 71896 | 0.72 | 0.672952 |
Target: 5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3' miRNA: 3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 14254 | 0.72 | 0.672952 |
Target: 5'- cGCGGCggUGGAUGUCGcguugGCGcCGGCGGCg -3' miRNA: 3'- -UGCUGa-GCCUGCAGC-----UGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 73334 | 0.73 | 0.622715 |
Target: 5'- -gGGCUCGGGCGUCGGCcgccuGGCGcUGGCc -3' miRNA: 3'- ugCUGAGCCUGCAGCUG-----CUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 102687 | 0.73 | 0.612659 |
Target: 5'- gAUGaaGCUCcuGGCGUCGGCGACGAUGAa -3' miRNA: 3'- -UGC--UGAGc-CUGCAGCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3199 | 0.75 | 0.533272 |
Target: 5'- cGCGGCUCGcaguaGGCcUCGAgGGCGGCGGCg -3' miRNA: 3'- -UGCUGAGC-----CUGcAGCUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 101691 | 0.75 | 0.533272 |
Target: 5'- cGCGGCUCaGGAa---GGCGGCGGCGGCg -3' miRNA: 3'- -UGCUGAG-CCUgcagCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 50196 | 0.75 | 0.543033 |
Target: 5'- cACGGCccCGGACGcCcccgGGCGGCGGCGGCg -3' miRNA: 3'- -UGCUGa-GCCUGCaG----CUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 5261 | 0.75 | 0.543033 |
Target: 5'- cGCGA---GGACG-CGGCGGCGGCGGCg -3' miRNA: 3'- -UGCUgagCCUGCaGCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 4150 | 0.75 | 0.552852 |
Target: 5'- gGCGGCUCauGGCcaCGGCGGCGGCGGCg -3' miRNA: 3'- -UGCUGAGc-CUGcaGCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 30186 | 0.75 | 0.552852 |
Target: 5'- aGCGACgacaGCGaCGACGGCGACGACg -3' miRNA: 3'- -UGCUGagccUGCaGCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 2681 | 0.74 | 0.562723 |
Target: 5'- gGCGGCaCGG-CGUCcACGACGACGAg -3' miRNA: 3'- -UGCUGaGCCuGCAGcUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3630 | 0.74 | 0.602616 |
Target: 5'- cACGGCgCGcACGgCGGCGACGGCGGCc -3' miRNA: 3'- -UGCUGaGCcUGCaGCUGCUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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