miRNA display CGI


Results 101 - 120 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 99876 0.71 0.751199
Target:  5'- -gGGCgCGGGgGUCGugG-CGGCGGCg -3'
miRNA:   3'- ugCUGaGCCUgCAGCugCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 39618 0.71 0.759679
Target:  5'- aGCGcCgcggCGGGCGUCGGCGuccgggcGCGGCGGa -3'
miRNA:   3'- -UGCuGa---GCCUGCAGCUGC-------UGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 102408 0.71 0.760616
Target:  5'- gGCGGcCUCGGGCG-CGGCcGCGGCGuCc -3'
miRNA:   3'- -UGCU-GAGCCUGCaGCUGcUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 72182 0.71 0.769923
Target:  5'- aGCGACgcgcCGuGGCGUCccacccgcugcGCGGCGACGACg -3'
miRNA:   3'- -UGCUGa---GC-CUGCAGc----------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 83912 0.71 0.769923
Target:  5'- uCGACUgcaucgcgcCGGugGUCGAcCGAaUGGCGGCg -3'
miRNA:   3'- uGCUGA---------GCCugCAGCU-GCU-GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 43419 0.72 0.70277
Target:  5'- cGCGGCgccggGGGCGUCGGCG-CG-CGGCa -3'
miRNA:   3'- -UGCUGag---CCUGCAGCUGCuGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3526 0.72 0.692877
Target:  5'- -aGGCUCuGGuuccggaagagcAgGUCGGCGGCGGCGGCg -3'
miRNA:   3'- ugCUGAG-CC------------UgCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 139552 0.73 0.622715
Target:  5'- gGCGGaa-GGGCGUgGugGGCGACGAg -3'
miRNA:   3'- -UGCUgagCCUGCAgCugCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 142357 0.73 0.622715
Target:  5'- cGCGcCUCGGGgGcCGGgGGCGGCGGCc -3'
miRNA:   3'- -UGCuGAGCCUgCaGCUgCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 57181 0.73 0.632779
Target:  5'- cCGaACUCGGAgGcgagcgCGGCGGCGACGAg -3'
miRNA:   3'- uGC-UGAGCCUgCa-----GCUGCUGCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 50401 0.73 0.632779
Target:  5'- gGCGACUaccCGGGCG-CGGCGGgGGCGGa -3'
miRNA:   3'- -UGCUGA---GCCUGCaGCUGCUgCUGCUg -5'
31130 3' -55.3 NC_006560.1 + 20933 0.73 0.662937
Target:  5'- -gGGC-CGG-CGgCGGCGGCGACGGCg -3'
miRNA:   3'- ugCUGaGCCuGCaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55260 0.73 0.662937
Target:  5'- cGCGGCcgCGGACcccgCGGCGACGcCGGCc -3'
miRNA:   3'- -UGCUGa-GCCUGca--GCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 71896 0.72 0.672952
Target:  5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3'
miRNA:   3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 14254 0.72 0.672952
Target:  5'- cGCGGCggUGGAUGUCGcguugGCGcCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCUGCAGC-----UGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3939 0.72 0.682934
Target:  5'- gGCGGCgccgCGGuCGgCGGCGAgGGCGGCc -3'
miRNA:   3'- -UGCUGa---GCCuGCaGCUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 5167 0.72 0.682934
Target:  5'- gGCcGCggGGGCGggccgCGGCGACGGCGGCc -3'
miRNA:   3'- -UGcUGagCCUGCa----GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 127152 0.72 0.682934
Target:  5'- uGCGGgUCGcGGCGUCGAgcuCGGCGGCGuCc -3'
miRNA:   3'- -UGCUgAGC-CUGCAGCU---GCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 5288 0.72 0.691885
Target:  5'- uCGGCgUCGGcguCGUCGucggccgccgcguGCGACGGCGGCg -3'
miRNA:   3'- uGCUG-AGCCu--GCAGC-------------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 117895 0.72 0.691885
Target:  5'- gGCGAgCUCGuGGCGcCGACGAcgcgcuacgccgcCGACGGCc -3'
miRNA:   3'- -UGCU-GAGC-CUGCaGCUGCU-------------GCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.