miRNA display CGI


Results 121 - 140 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 3' -55.3 NC_006560.1 + 17692 0.7 0.797097
Target:  5'- -gGGCcCGGGgggGUCGugGGCGGCGGCc -3'
miRNA:   3'- ugCUGaGCCUg--CAGCugCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 8650 0.7 0.797097
Target:  5'- cGCGACgaagccggCGGcccGCGuUCGcCGGCGGCGGCg -3'
miRNA:   3'- -UGCUGa-------GCC---UGC-AGCuGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 103982 0.71 0.741681
Target:  5'- gGCGAgauCUCGGuCGccgaGGCGGCGAUGGCa -3'
miRNA:   3'- -UGCU---GAGCCuGCag--CUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 150033 0.71 0.73207
Target:  5'- cCGACggCGGGCGagGACGACcuccGCGGCg -3'
miRNA:   3'- uGCUGa-GCCUGCagCUGCUGc---UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 75113 0.71 0.731104
Target:  5'- cGCGGCUCGGggcccugggggccGCGgccgcCGACcuGGCGGCGGCg -3'
miRNA:   3'- -UGCUGAGCC-------------UGCa----GCUG--CUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 55260 0.73 0.662937
Target:  5'- cGCGGCcgCGGACcccgCGGCGACGcCGGCc -3'
miRNA:   3'- -UGCUGa-GCCUGca--GCUGCUGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 71896 0.72 0.672952
Target:  5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3'
miRNA:   3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 14254 0.72 0.672952
Target:  5'- cGCGGCggUGGAUGUCGcguugGCGcCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GCCUGCAGC-----UGCuGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3939 0.72 0.682934
Target:  5'- gGCGGCgccgCGGuCGgCGGCGAgGGCGGCc -3'
miRNA:   3'- -UGCUGa---GCCuGCaGCUGCUgCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 5167 0.72 0.682934
Target:  5'- gGCcGCggGGGCGggccgCGGCGACGGCGGCc -3'
miRNA:   3'- -UGcUGagCCUGCa----GCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 127152 0.72 0.682934
Target:  5'- uGCGGgUCGcGGCGUCGAgcuCGGCGGCGuCc -3'
miRNA:   3'- -UGCUgAGC-CUGCAGCU---GCUGCUGCuG- -5'
31130 3' -55.3 NC_006560.1 + 5288 0.72 0.691885
Target:  5'- uCGGCgUCGGcguCGUCGucggccgccgcguGCGACGGCGGCg -3'
miRNA:   3'- uGCUG-AGCCu--GCAGC-------------UGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 117895 0.72 0.691885
Target:  5'- gGCGAgCUCGuGGCGcCGACGAcgcgcuacgccgcCGACGGCc -3'
miRNA:   3'- -UGCU-GAGC-CUGCaGCUGCU-------------GCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 3526 0.72 0.692877
Target:  5'- -aGGCUCuGGuuccggaagagcAgGUCGGCGGCGGCGGCg -3'
miRNA:   3'- ugCUGAG-CC------------UgCAGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 43419 0.72 0.70277
Target:  5'- cGCGGCgccggGGGCGUCGGCG-CG-CGGCa -3'
miRNA:   3'- -UGCUGag---CCUGCAGCUGCuGCuGCUG- -5'
31130 3' -55.3 NC_006560.1 + 141575 0.72 0.70277
Target:  5'- cCGGCUC-GACccCGGCGGCGGCGGCc -3'
miRNA:   3'- uGCUGAGcCUGcaGCUGCUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 10546 0.72 0.70277
Target:  5'- cCGACgcacUGGGCGUCGACGACGGu--- -3'
miRNA:   3'- uGCUGa---GCCUGCAGCUGCUGCUgcug -5'
31130 3' -55.3 NC_006560.1 + 4044 0.72 0.712606
Target:  5'- gGCGGCggCGcGGCGcCGGCcGCGGCGGCg -3'
miRNA:   3'- -UGCUGa-GC-CUGCaGCUGcUGCUGCUG- -5'
31130 3' -55.3 NC_006560.1 + 12005 0.72 0.712606
Target:  5'- aGCGGCacaGGGCGaaggCGACGGCGugGCGGCg -3'
miRNA:   3'- -UGCUGag-CCUGCa---GCUGCUGC--UGCUG- -5'
31130 3' -55.3 NC_006560.1 + 2578 0.71 0.722375
Target:  5'- cGCGGCgggccagCGGACGUCGcacugcGCGGCGggcagcACGGCg -3'
miRNA:   3'- -UGCUGa------GCCUGCAGC------UGCUGC------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.