Results 101 - 120 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31130 | 3' | -55.3 | NC_006560.1 | + | 99876 | 0.71 | 0.751199 |
Target: 5'- -gGGCgCGGGgGUCGugG-CGGCGGCg -3' miRNA: 3'- ugCUGaGCCUgCAGCugCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 39618 | 0.71 | 0.759679 |
Target: 5'- aGCGcCgcggCGGGCGUCGGCGuccgggcGCGGCGGa -3' miRNA: 3'- -UGCuGa---GCCUGCAGCUGC-------UGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 102408 | 0.71 | 0.760616 |
Target: 5'- gGCGGcCUCGGGCG-CGGCcGCGGCGuCc -3' miRNA: 3'- -UGCU-GAGCCUGCaGCUGcUGCUGCuG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 72182 | 0.71 | 0.769923 |
Target: 5'- aGCGACgcgcCGuGGCGUCccacccgcugcGCGGCGACGACg -3' miRNA: 3'- -UGCUGa---GC-CUGCAGc----------UGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 83912 | 0.71 | 0.769923 |
Target: 5'- uCGACUgcaucgcgcCGGugGUCGAcCGAaUGGCGGCg -3' miRNA: 3'- uGCUGA---------GCCugCAGCU-GCU-GCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 43419 | 0.72 | 0.70277 |
Target: 5'- cGCGGCgccggGGGCGUCGGCG-CG-CGGCa -3' miRNA: 3'- -UGCUGag---CCUGCAGCUGCuGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3526 | 0.72 | 0.692877 |
Target: 5'- -aGGCUCuGGuuccggaagagcAgGUCGGCGGCGGCGGCg -3' miRNA: 3'- ugCUGAG-CC------------UgCAGCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 139552 | 0.73 | 0.622715 |
Target: 5'- gGCGGaa-GGGCGUgGugGGCGACGAg -3' miRNA: 3'- -UGCUgagCCUGCAgCugCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 142357 | 0.73 | 0.622715 |
Target: 5'- cGCGcCUCGGGgGcCGGgGGCGGCGGCc -3' miRNA: 3'- -UGCuGAGCCUgCaGCUgCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 57181 | 0.73 | 0.632779 |
Target: 5'- cCGaACUCGGAgGcgagcgCGGCGGCGACGAg -3' miRNA: 3'- uGC-UGAGCCUgCa-----GCUGCUGCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 50401 | 0.73 | 0.632779 |
Target: 5'- gGCGACUaccCGGGCG-CGGCGGgGGCGGa -3' miRNA: 3'- -UGCUGA---GCCUGCaGCUGCUgCUGCUg -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 20933 | 0.73 | 0.662937 |
Target: 5'- -gGGC-CGG-CGgCGGCGGCGACGGCg -3' miRNA: 3'- ugCUGaGCCuGCaGCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 55260 | 0.73 | 0.662937 |
Target: 5'- cGCGGCcgCGGACcccgCGGCGACGcCGGCc -3' miRNA: 3'- -UGCUGa-GCCUGca--GCUGCUGCuGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 71896 | 0.72 | 0.672952 |
Target: 5'- gGCG-CUCuggGGAUGgggcucuaccgCGACGGCGACGACg -3' miRNA: 3'- -UGCuGAG---CCUGCa----------GCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 14254 | 0.72 | 0.672952 |
Target: 5'- cGCGGCggUGGAUGUCGcguugGCGcCGGCGGCg -3' miRNA: 3'- -UGCUGa-GCCUGCAGC-----UGCuGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 3939 | 0.72 | 0.682934 |
Target: 5'- gGCGGCgccgCGGuCGgCGGCGAgGGCGGCc -3' miRNA: 3'- -UGCUGa---GCCuGCaGCUGCUgCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 5167 | 0.72 | 0.682934 |
Target: 5'- gGCcGCggGGGCGggccgCGGCGACGGCGGCc -3' miRNA: 3'- -UGcUGagCCUGCa----GCUGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 127152 | 0.72 | 0.682934 |
Target: 5'- uGCGGgUCGcGGCGUCGAgcuCGGCGGCGuCc -3' miRNA: 3'- -UGCUgAGC-CUGCAGCU---GCUGCUGCuG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 5288 | 0.72 | 0.691885 |
Target: 5'- uCGGCgUCGGcguCGUCGucggccgccgcguGCGACGGCGGCg -3' miRNA: 3'- uGCUG-AGCCu--GCAGC-------------UGCUGCUGCUG- -5' |
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31130 | 3' | -55.3 | NC_006560.1 | + | 117895 | 0.72 | 0.691885 |
Target: 5'- gGCGAgCUCGuGGCGcCGACGAcgcgcuacgccgcCGACGGCc -3' miRNA: 3'- -UGCU-GAGC-CUGCaGCUGCU-------------GCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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