miRNA display CGI


Results 1 - 20 of 658 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 5' -65.4 NC_006560.1 + 91146 0.66 0.567281
Target:  5'- uUCGCGagcGCCGCCCgcaGCCccaUCGGCGUCu -3'
miRNA:   3'- -GGCGC---UGGCGGGg--CGGa--GGCUGCGGc -5'
31130 5' -65.4 NC_006560.1 + 117639 0.66 0.567281
Target:  5'- aCGCGACCggcgagugcgGCCCCuggGUCUCgGcguuCGCCGc -3'
miRNA:   3'- gGCGCUGG----------CGGGG---CGGAGgCu---GCGGC- -5'
31130 5' -65.4 NC_006560.1 + 14563 0.66 0.567281
Target:  5'- -gGCGGCggCGCUCaCGCCUCgGAgguCGCCa -3'
miRNA:   3'- ggCGCUG--GCGGG-GCGGAGgCU---GCGGc -5'
31130 5' -65.4 NC_006560.1 + 78344 0.66 0.567281
Target:  5'- uCCGCGGCgGCccgCCCGaCCcCgCGGCGCgCGu -3'
miRNA:   3'- -GGCGCUGgCG---GGGC-GGaG-GCUGCG-GC- -5'
31130 5' -65.4 NC_006560.1 + 135592 0.66 0.567281
Target:  5'- gCGCGGgUGCCCCgGCCgcagugguUCCGggacguggcgGCGCUGg -3'
miRNA:   3'- gGCGCUgGCGGGG-CGG--------AGGC----------UGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 94328 0.66 0.567281
Target:  5'- gCGCGACCGUcgCCCGgCggCUGGCGgaCCGc -3'
miRNA:   3'- gGCGCUGGCG--GGGCgGa-GGCUGC--GGC- -5'
31130 5' -65.4 NC_006560.1 + 91399 0.66 0.567281
Target:  5'- aCCGCGA-CGCCCUGCagaCCGuccugaccaACGuCCGg -3'
miRNA:   3'- -GGCGCUgGCGGGGCGga-GGC---------UGC-GGC- -5'
31130 5' -65.4 NC_006560.1 + 119583 0.66 0.567281
Target:  5'- -aGCGcCCgGCCCCGCCcugcuccCCGGCGgggcCCGa -3'
miRNA:   3'- ggCGCuGG-CGGGGCGGa------GGCUGC----GGC- -5'
31130 5' -65.4 NC_006560.1 + 58374 0.66 0.567281
Target:  5'- uCCGCGgggggaGCgGCgCCCGCg-UCGGCGCCc -3'
miRNA:   3'- -GGCGC------UGgCG-GGGCGgaGGCUGCGGc -5'
31130 5' -65.4 NC_006560.1 + 94410 0.66 0.567281
Target:  5'- gCUGCGGCgCuaCCUGCC-CC-ACGCCGc -3'
miRNA:   3'- -GGCGCUG-GcgGGGCGGaGGcUGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 18844 0.66 0.567281
Target:  5'- uCCGCGagGCCGCguCUCGCCUCUGG-GCg- -3'
miRNA:   3'- -GGCGC--UGGCG--GGGCGGAGGCUgCGgc -5'
31130 5' -65.4 NC_006560.1 + 15496 0.66 0.565423
Target:  5'- aCGCG-CUcgggGCCCCGCCcCCGAgucccggggccaGCCGg -3'
miRNA:   3'- gGCGCuGG----CGGGGCGGaGGCUg-----------CGGC- -5'
31130 5' -65.4 NC_006560.1 + 111293 0.66 0.558006
Target:  5'- cUCGaGAagGCCCCGCCgCUGGCGCUc -3'
miRNA:   3'- -GGCgCUggCGGGGCGGaGGCUGCGGc -5'
31130 5' -65.4 NC_006560.1 + 75075 0.66 0.558006
Target:  5'- -aGCGAcCCGgCUgGCCcUCGACGCCc -3'
miRNA:   3'- ggCGCU-GGCgGGgCGGaGGCUGCGGc -5'
31130 5' -65.4 NC_006560.1 + 73085 0.66 0.558006
Target:  5'- cCC-CGACgCGCCCgGCCUCCuGCaGCa- -3'
miRNA:   3'- -GGcGCUG-GCGGGgCGGAGGcUG-CGgc -5'
31130 5' -65.4 NC_006560.1 + 25862 0.66 0.558006
Target:  5'- cCCGgGGCCcgaugcacgcGCuCCCGCCggcgugggCCGcGCGCCu -3'
miRNA:   3'- -GGCgCUGG----------CG-GGGCGGa-------GGC-UGCGGc -5'
31130 5' -65.4 NC_006560.1 + 26301 0.66 0.558006
Target:  5'- -gGCGGCUucuGCCCCGUCggcggCCGcguagaagacgaGCGCCa -3'
miRNA:   3'- ggCGCUGG---CGGGGCGGa----GGC------------UGCGGc -5'
31130 5' -65.4 NC_006560.1 + 125750 0.66 0.558006
Target:  5'- aCCGUgucccuGACgGCCaacgaguucgaCGCCguggaucuggagUCCGACGCCGg -3'
miRNA:   3'- -GGCG------CUGgCGGg----------GCGG------------AGGCUGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 25147 0.66 0.558006
Target:  5'- gUGCG-CCGCugcggCCCGUCUacCUGGCGCUGg -3'
miRNA:   3'- gGCGCuGGCG-----GGGCGGA--GGCUGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 60674 0.66 0.558006
Target:  5'- -aGgGGCC-CCCgCGCCcCUGGCGCCc -3'
miRNA:   3'- ggCgCUGGcGGG-GCGGaGGCUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.