miRNA display CGI


Results 1 - 20 of 658 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31130 5' -65.4 NC_006560.1 + 97 0.75 0.146314
Target:  5'- cCCGCGccCCGCCCCcgcgGCCgcggCCGGCGCgGg -3'
miRNA:   3'- -GGCGCu-GGCGGGG----CGGa---GGCUGCGgC- -5'
31130 5' -65.4 NC_006560.1 + 138 0.69 0.386686
Target:  5'- gCGgGGCCgGCCCCGCC-CCG-CGgucCCGg -3'
miRNA:   3'- gGCgCUGG-CGGGGCGGaGGCuGC---GGC- -5'
31130 5' -65.4 NC_006560.1 + 173 0.74 0.193613
Target:  5'- cCCGCGGuCCcgGCCCCGCCggcguuuuuuUCCGcgcgcGCGCCGc -3'
miRNA:   3'- -GGCGCU-GG--CGGGGCGG----------AGGC-----UGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 403 0.68 0.402263
Target:  5'- cCCGCccccccCCGCCCCGCCUgugggguuccCCGGCcuCCGc -3'
miRNA:   3'- -GGCGcu----GGCGGGGCGGA----------GGCUGc-GGC- -5'
31130 5' -65.4 NC_006560.1 + 494 0.67 0.503428
Target:  5'- cCCGuCGGucUCGCucuCCCGCCaCgGGCGCCGg -3'
miRNA:   3'- -GGC-GCU--GGCG---GGGCGGaGgCUGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 531 0.66 0.521388
Target:  5'- gCgGCGGCCGgCCgCGCCccggguccCCGGCGUCc -3'
miRNA:   3'- -GgCGCUGGCgGG-GCGGa-------GGCUGCGGc -5'
31130 5' -65.4 NC_006560.1 + 566 0.66 0.520484
Target:  5'- cCCGCGcgccCCGucggucucgcucuCCCCGgcuCCUCCG-CGCCGc -3'
miRNA:   3'- -GGCGCu---GGC-------------GGGGC---GGAGGCuGCGGC- -5'
31130 5' -65.4 NC_006560.1 + 730 0.67 0.463203
Target:  5'- cCCGCGGCCccguccccccccgcgGCCCCGUCcCCcccccccgcGGCGCgGg -3'
miRNA:   3'- -GGCGCUGG---------------CGGGGCGGaGG---------CUGCGgC- -5'
31130 5' -65.4 NC_006560.1 + 800 0.72 0.253216
Target:  5'- uUCGCuuccGGCCGCCgCGCUcacggaaccgguaUCCGACGCCc -3'
miRNA:   3'- -GGCG----CUGGCGGgGCGG-------------AGGCUGCGGc -5'
31130 5' -65.4 NC_006560.1 + 885 0.74 0.180661
Target:  5'- gCGCGcCCGCCCC-CCgCCGGgGCCGc -3'
miRNA:   3'- gGCGCuGGCGGGGcGGaGGCUgCGGC- -5'
31130 5' -65.4 NC_006560.1 + 942 0.67 0.503428
Target:  5'- gCC-CGGCaGCCCCGCCcCCGAUcuucacuagGCCu -3'
miRNA:   3'- -GGcGCUGgCGGGGCGGaGGCUG---------CGGc -5'
31130 5' -65.4 NC_006560.1 + 1014 0.68 0.434583
Target:  5'- gCCGUcuCCGCCCCGCCgUCucCGCCc -3'
miRNA:   3'- -GGCGcuGGCGGGGCGGaGGcuGCGGc -5'
31130 5' -65.4 NC_006560.1 + 1067 0.68 0.450452
Target:  5'- aCGCGGCCGCCgacggggcagaagCCGCCcgccaggcuccCCGGCGgCGc -3'
miRNA:   3'- gGCGCUGGCGG-------------GGCGGa----------GGCUGCgGC- -5'
31130 5' -65.4 NC_006560.1 + 1121 0.84 0.038835
Target:  5'- cCCGCGACgCGCCCC-CCUCCGGC-CCGg -3'
miRNA:   3'- -GGCGCUG-GCGGGGcGGAGGCUGcGGC- -5'
31130 5' -65.4 NC_006560.1 + 1276 0.71 0.301894
Target:  5'- cCCGCGAagcCCCCGCCgcgCCGG-GCCGc -3'
miRNA:   3'- -GGCGCUggcGGGGCGGa--GGCUgCGGC- -5'
31130 5' -65.4 NC_006560.1 + 1394 0.66 0.530461
Target:  5'- cCCGCGGCCcucGCCCC-CCgcggCCcuCGCCc -3'
miRNA:   3'- -GGCGCUGG---CGGGGcGGa---GGcuGCGGc -5'
31130 5' -65.4 NC_006560.1 + 1426 0.73 0.212141
Target:  5'- cCCGCGGCCcucGCCCC-CCUCCcGGCaCCGc -3'
miRNA:   3'- -GGCGCUGG---CGGGGcGGAGG-CUGcGGC- -5'
31130 5' -65.4 NC_006560.1 + 1606 0.68 0.451297
Target:  5'- aCGCGGCCGgCgCGCgCUCUGcgggcuucGCGCCu -3'
miRNA:   3'- gGCGCUGGCgGgGCG-GAGGC--------UGCGGc -5'
31130 5' -65.4 NC_006560.1 + 1920 0.66 0.529551
Target:  5'- uCgGCGGCCGCCggcUCGCCguccgggucccagUCCGGgGUCGc -3'
miRNA:   3'- -GgCGCUGGCGG---GGCGG-------------AGGCUgCGGC- -5'
31130 5' -65.4 NC_006560.1 + 2315 0.67 0.459785
Target:  5'- gCgGCGGCCGCCUCGCgCgcgggcgagUCGGCGgCGc -3'
miRNA:   3'- -GgCGCUGGCGGGGCG-Ga--------GGCUGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.