miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 3' -59.3 NC_006560.1 + 26497 0.67 0.679255
Target:  5'- -cGGGGGGcGGGCGcGcGAGGGGGcGGGGg -3'
miRNA:   3'- guCUCCUC-CUCGU-C-CUCCUCCuCCUC- -5'
31133 3' -59.3 NC_006560.1 + 6771 0.67 0.679255
Target:  5'- cCGGGGGcucGGGGGCucGGGGGcucGGGGGGAn -3'
miRNA:   3'- -GUCUCC---UCCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 26242 0.67 0.679255
Target:  5'- cCGGAGGccGGGCcGGAGGGGGGcgcgucgcGGGGc -3'
miRNA:   3'- -GUCUCCucCUCGuCCUCCUCCU--------CCUC- -5'
31133 3' -59.3 NC_006560.1 + 6672 0.68 0.659207
Target:  5'- gGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3'
miRNA:   3'- gUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6739 0.68 0.659207
Target:  5'- gGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3'
miRNA:   3'- gUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 32500 0.68 0.65619
Target:  5'- aAGGGGGGGccccagggguagAGCAGGuagggcgccccccaGGGAGGcgGGGAGu -3'
miRNA:   3'- gUCUCCUCC------------UCGUCC--------------UCCUCC--UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 6016 0.68 0.649147
Target:  5'- aAGGGcaGGGGGCAGGGGGaAGGGcGAGa -3'
miRNA:   3'- gUCUCc-UCCUCGUCCUCC-UCCUcCUC- -5'
31133 3' -59.3 NC_006560.1 + 61524 0.68 0.639074
Target:  5'- uCAGGGGgaagcuGGGGGCGGGGGcGGGGgcgccaaacAGGGGc -3'
miRNA:   3'- -GUCUCC------UCCUCGUCCUC-CUCC---------UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 10219 0.68 0.639074
Target:  5'- uGGGGGuAGGGGUAGGGGuGGGcGGcGGGGg -3'
miRNA:   3'- gUCUCC-UCCUCGUCCUC-CUC-CU-CCUC- -5'
31133 3' -59.3 NC_006560.1 + 59398 0.68 0.638066
Target:  5'- gGGAGGGGGGGUGGccacgcguugcGAGGGGGcccggugcggacgAGGGGg -3'
miRNA:   3'- gUCUCCUCCUCGUC-----------CUCCUCC-------------UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 27282 0.68 0.628995
Target:  5'- gCGGGGGcGGGGCGcGGGGcgcGGGGAGGGc -3'
miRNA:   3'- -GUCUCCuCCUCGU-CCUC---CUCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6621 0.68 0.618919
Target:  5'- uCGGGGGAccgGGGGCucGGGGGcucGGGGGGAc -3'
miRNA:   3'- -GUCUCCU---CCUCGu-CCUCC---UCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 33472 0.68 0.608853
Target:  5'- aGGAGGAGaGGCGGcGGGGGGccgccggcaGGGAGg -3'
miRNA:   3'- gUCUCCUCcUCGUCcUCCUCC---------UCCUC- -5'
31133 3' -59.3 NC_006560.1 + 57725 0.69 0.598803
Target:  5'- --cGGcGAGGAGCAGccccGGGAGGGGGGa -3'
miRNA:   3'- gucUC-CUCCUCGUCc---UCCUCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 6573 0.69 0.598803
Target:  5'- aCGGGGGcucGGGGGCucGGGGGGAcGGGGGc- -3'
miRNA:   3'- -GUCUCC---UCCUCG--UCCUCCU-CCUCCuc -5'
31133 3' -59.3 NC_006560.1 + 142673 0.69 0.588778
Target:  5'- -cGGGuGAGGGGCGGcGGcGGAccGGAGGGGg -3'
miRNA:   3'- guCUC-CUCCUCGUC-CU-CCU--CCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 45270 0.69 0.588778
Target:  5'- gCGGGGGAGGuGCcccGGGGGuacgcgcGGAGGAc -3'
miRNA:   3'- -GUCUCCUCCuCGu--CCUCCu------CCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 102633 0.69 0.577785
Target:  5'- cCGGGGGAGGuuaaacGCGGGGGccgcccagaagucGGGGGGGAa -3'
miRNA:   3'- -GUCUCCUCCu-----CGUCCUC-------------CUCCUCCUc -5'
31133 3' -59.3 NC_006560.1 + 148398 0.69 0.56287
Target:  5'- gGGAGcGGGGAcgcggggcgcuccggGCGGGccGGcGAGGAGGAGa -3'
miRNA:   3'- gUCUC-CUCCU---------------CGUCC--UC-CUCCUCCUC- -5'
31133 3' -59.3 NC_006560.1 + 85537 0.7 0.529483
Target:  5'- --uGGGGGGGGCGGGggcgcccguGGGGGGcGGGGg -3'
miRNA:   3'- gucUCCUCCUCGUCC---------UCCUCCuCCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.