miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 5' -70.1 NC_006560.1 + 12726 0.66 0.327243
Target:  5'- cGGgGCCCUGGauggugaCgUCGUcgGCCUCCGGg -3'
miRNA:   3'- -CCgCGGGGCCgg-----GgGGCG--CGGAGGCC- -5'
31133 5' -70.1 NC_006560.1 + 21047 0.66 0.327243
Target:  5'- gGGCGCCCgcgCGGCgUCCCCGguCGCCUagcaaCGc -3'
miRNA:   3'- -CCGCGGG---GCCG-GGGGGC--GCGGAg----GCc -5'
31133 5' -70.1 NC_006560.1 + 85246 0.66 0.327243
Target:  5'- cGGCGCCCgCGGCgCggaagCCgGCGCUg-CGGa -3'
miRNA:   3'- -CCGCGGG-GCCGgG-----GGgCGCGGagGCC- -5'
31133 5' -70.1 NC_006560.1 + 134798 0.66 0.327243
Target:  5'- cGCGCuCCaCGGCCCCgCCcacgguCGCCaggucCCGGg -3'
miRNA:   3'- cCGCG-GG-GCCGGGG-GGc-----GCGGa----GGCC- -5'
31133 5' -70.1 NC_006560.1 + 72386 0.66 0.327243
Target:  5'- uGGCGCugCCCGcCCCCCCaccCuCCUCCGa -3'
miRNA:   3'- -CCGCG--GGGCcGGGGGGc--GcGGAGGCc -5'
31133 5' -70.1 NC_006560.1 + 83362 0.66 0.327243
Target:  5'- cGGCgGCCCgGGgCCCCaGC-CCUCCc- -3'
miRNA:   3'- -CCG-CGGGgCCgGGGGgCGcGGAGGcc -5'
31133 5' -70.1 NC_006560.1 + 89868 0.66 0.327243
Target:  5'- cGGuCGCCaCCuggaGCCCagcaCCCGCGCC-CCGa -3'
miRNA:   3'- -CC-GCGG-GGc---CGGG----GGGCGCGGaGGCc -5'
31133 5' -70.1 NC_006560.1 + 45779 0.66 0.327243
Target:  5'- gGGCGCgggCUCGGUCCgCCgGgGCCUuuuggcccCCGGg -3'
miRNA:   3'- -CCGCG---GGGCCGGG-GGgCgCGGA--------GGCC- -5'
31133 5' -70.1 NC_006560.1 + 78086 0.66 0.327243
Target:  5'- cGGCGCUCgggggccucgaCGGCCCCCgGgCGCUggUGGc -3'
miRNA:   3'- -CCGCGGG-----------GCCGGGGGgC-GCGGagGCC- -5'
31133 5' -70.1 NC_006560.1 + 84710 0.66 0.327243
Target:  5'- gGGCGCCUCGGCgCCaCCagccgcgagGCGCUcaUCCu- -3'
miRNA:   3'- -CCGCGGGGCCGgGG-GG---------CGCGG--AGGcc -5'
31133 5' -70.1 NC_006560.1 + 137185 0.66 0.327243
Target:  5'- gGGCGCggagggCgCGGCCCCgCCG-GCggCCGGg -3'
miRNA:   3'- -CCGCG------GgGCCGGGG-GGCgCGgaGGCC- -5'
31133 5' -70.1 NC_006560.1 + 68256 0.66 0.369837
Target:  5'- gGGCGCacgggcucccggagaCCGcGCUCCUCGCGgagaaCCUcCCGGg -3'
miRNA:   3'- -CCGCGg--------------GGC-CGGGGGGCGC-----GGA-GGCC- -5'
31133 5' -70.1 NC_006560.1 + 7632 0.66 0.327243
Target:  5'- cGGCGCUcuuCCGGCCgucggggcgaCCgUCGCcCCUCUGGg -3'
miRNA:   3'- -CCGCGG---GGCCGG----------GG-GGCGcGGAGGCC- -5'
31133 5' -70.1 NC_006560.1 + 88831 0.66 0.327243
Target:  5'- --gGCCgCCGGgCCCCCGUGUCccaCCGa -3'
miRNA:   3'- ccgCGG-GGCCgGGGGGCGCGGa--GGCc -5'
31133 5' -70.1 NC_006560.1 + 35094 0.66 0.327243
Target:  5'- cGCGCUCaccuggGGCCCCCCauGgGuCCgggCCGGg -3'
miRNA:   3'- cCGCGGGg-----CCGGGGGG--CgC-GGa--GGCC- -5'
31133 5' -70.1 NC_006560.1 + 75414 0.66 0.327243
Target:  5'- cGCGgCCCGGCgCgCCCGCgacaGCCgcgagcgCUGGg -3'
miRNA:   3'- cCGCgGGGCCGgG-GGGCG----CGGa------GGCC- -5'
31133 5' -70.1 NC_006560.1 + 142532 0.66 0.327243
Target:  5'- cGGgGCCCCGGgCCCggcggCCGgGCgCgUCGGa -3'
miRNA:   3'- -CCgCGGGGCCgGGG-----GGCgCG-GaGGCC- -5'
31133 5' -70.1 NC_006560.1 + 87890 0.66 0.327243
Target:  5'- gGGCGCgCC-GUCCCggCCGCGCC-CCaGGc -3'
miRNA:   3'- -CCGCGgGGcCGGGG--GGCGCGGaGG-CC- -5'
31133 5' -70.1 NC_006560.1 + 30728 0.66 0.327243
Target:  5'- -aUGCCCC-GCCCaCCCGCccaggcccgGCCcCCGGc -3'
miRNA:   3'- ccGCGGGGcCGGG-GGGCG---------CGGaGGCC- -5'
31133 5' -70.1 NC_006560.1 + 483 0.66 0.327243
Target:  5'- -cCGUCCCGGCCCCCguCGgucucgcucuccCGCCacgggcgCCGGg -3'
miRNA:   3'- ccGCGGGGCCGGGGG--GC------------GCGGa------GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.