miRNA display CGI


Results 21 - 40 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31133 5' -70.1 NC_006560.1 + 2305 0.66 0.361882
Target:  5'- gGGCGCgCCggcggCGGCCgCCUCGCGCg--CGGg -3'
miRNA:   3'- -CCGCG-GG-----GCCGG-GGGGCGCGgagGCC- -5'
31133 5' -70.1 NC_006560.1 + 69468 0.66 0.361882
Target:  5'- gGGCGUCCUGaggcagacGCUCgCCCGCGUCaugggcCCGGu -3'
miRNA:   3'- -CCGCGGGGC--------CGGG-GGGCGCGGa-----GGCC- -5'
31133 5' -70.1 NC_006560.1 + 50084 0.66 0.361882
Target:  5'- -aCGCCgCCGGCCCCgCCG-GCggCaCGGg -3'
miRNA:   3'- ccGCGG-GGCCGGGG-GGCgCGgaG-GCC- -5'
31133 5' -70.1 NC_006560.1 + 133847 0.66 0.361882
Target:  5'- aGGCGCUCCaGGUCCUgCGCGUaugaGGg -3'
miRNA:   3'- -CCGCGGGG-CCGGGGgGCGCGgaggCC- -5'
31133 5' -70.1 NC_006560.1 + 26673 0.66 0.361882
Target:  5'- cGGgGCCgCggggggggacggGGCCCgcgacgagCCCGCGCCgcgggcgcgCCGGg -3'
miRNA:   3'- -CCgCGGgG------------CCGGG--------GGGCGCGGa--------GGCC- -5'
31133 5' -70.1 NC_006560.1 + 12319 0.66 0.361165
Target:  5'- aGGCGCCCCaucggggaccggaGGCaCCUCgGgGCUggCGGg -3'
miRNA:   3'- -CCGCGGGG-------------CCG-GGGGgCgCGGagGCC- -5'
31133 5' -70.1 NC_006560.1 + 102428 0.66 0.361165
Target:  5'- cGGCGUCCgccuccuCGGCCgCCgcggCCGcCGUCUCCaGGg -3'
miRNA:   3'- -CCGCGGG-------GCCGG-GG----GGC-GCGGAGG-CC- -5'
31133 5' -70.1 NC_006560.1 + 118399 0.66 0.354754
Target:  5'- gGGCGguucgggCCCGaCCCCggggcgcggcuaCCGCGCC-CCGGg -3'
miRNA:   3'- -CCGCg------GGGCcGGGG------------GGCGCGGaGGCC- -5'
31133 5' -70.1 NC_006560.1 + 14096 0.66 0.354754
Target:  5'- cGGCaGCaCCGGUggaggacggCCCCCGCGCCcaUGGc -3'
miRNA:   3'- -CCG-CGgGGCCG---------GGGGGCGCGGagGCC- -5'
31133 5' -70.1 NC_006560.1 + 68813 0.66 0.354754
Target:  5'- cGCGggaUCgUGGCgCCCCCGCGCCUgCu- -3'
miRNA:   3'- cCGC---GGgGCCG-GGGGGCGCGGAgGcc -5'
31133 5' -70.1 NC_006560.1 + 24000 0.66 0.354754
Target:  5'- cGCGCCC--GCCCgCCCGCccGCCgacgCCGa -3'
miRNA:   3'- cCGCGGGgcCGGG-GGGCG--CGGa---GGCc -5'
31133 5' -70.1 NC_006560.1 + 114579 0.66 0.354754
Target:  5'- cGCGCCaCCGcuGCCUCgaGCGCCUCaucguGGa -3'
miRNA:   3'- cCGCGG-GGC--CGGGGggCGCGGAGg----CC- -5'
31133 5' -70.1 NC_006560.1 + 123918 0.66 0.354754
Target:  5'- cGuCGCCCCGcGCUgagcgcaagcggCCCC-CGCCggaggCCGGg -3'
miRNA:   3'- cC-GCGGGGC-CGG------------GGGGcGCGGa----GGCC- -5'
31133 5' -70.1 NC_006560.1 + 56892 0.66 0.354754
Target:  5'- cGCG-CCgGGCCCCCCcuCGCggagCCGGc -3'
miRNA:   3'- cCGCgGGgCCGGGGGGc-GCGga--GGCC- -5'
31133 5' -70.1 NC_006560.1 + 83722 0.66 0.354754
Target:  5'- cGGCGCCggGGCCCguCCCGaCGCggagCUCgGGc -3'
miRNA:   3'- -CCGCGGggCCGGG--GGGC-GCG----GAGgCC- -5'
31133 5' -70.1 NC_006560.1 + 129876 0.66 0.354754
Target:  5'- aGGCGCgcuUCCGGCUgCgCGCGCCcgCgUGGg -3'
miRNA:   3'- -CCGCG---GGGCCGGgGgGCGCGGa-G-GCC- -5'
31133 5' -70.1 NC_006560.1 + 105126 0.66 0.354754
Target:  5'- cGCuaCUgGGCCCCCCGgGUCgacgcgugguaCCGGg -3'
miRNA:   3'- cCGcgGGgCCGGGGGGCgCGGa----------GGCC- -5'
31133 5' -70.1 NC_006560.1 + 36175 0.66 0.354754
Target:  5'- cGGCGgacCCCCGGUCCgggCUCGgGgCUCgGGg -3'
miRNA:   3'- -CCGC---GGGGCCGGG---GGGCgCgGAGgCC- -5'
31133 5' -70.1 NC_006560.1 + 144491 0.66 0.354754
Target:  5'- cGGCcuGCCCCGucuGCCCCgCGgcCGCCUUccccgCGGg -3'
miRNA:   3'- -CCG--CGGGGC---CGGGGgGC--GCGGAG-----GCC- -5'
31133 5' -70.1 NC_006560.1 + 134641 0.66 0.354047
Target:  5'- cGGCGgCCagaGGaccacgcacucgcCCCCCCGC-CCgCCGGc -3'
miRNA:   3'- -CCGCgGGg--CC-------------GGGGGGCGcGGaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.